Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 CICP17-201ENST00000418553 2377 ntBASIC13.16□□□□□ -0.3
SOX2P48431 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX2P48431 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SOX2P48431 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 HLA-K-203ENST00000430151 1046 ntBASIC13.16□□□□□ -0.3
SOX2P48431 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX2P48431 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX2P48431 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX2P48431 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SOX2P48431 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 AC073592.8-201ENST00000624126 511 ntBASIC13.16□□□□□ -0.3
SOX2P48431 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX2P48431 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.16□□□□□ -0.3
SOX2P48431 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SOX2P48431 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 AL158070.2-201ENST00000623713 1621 ntBASIC13.16□□□□□ -0.3
SOX2P48431 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX2P48431 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX2P48431 AC004899.2-201ENST00000622993 3860 ntBASIC13.15□□□□□ -0.3
SOX2P48431 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX2P48431 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX2P48431 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SOX2P48431 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX2P48431 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX2P48431 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX2P48431 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX2P48431 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.15□□□□□ -0.3
SOX2P48431 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX2P48431 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SOX2P48431 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX2P48431 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX2P48431 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SOX2P48431 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.15□□□□□ -0.31
SOX2P48431 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
SOX2P48431 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SOX2P48431 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
SOX2P48431 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SOX2P48431 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
SOX2P48431 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms