RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 NISCHQ9Y2I1 1504 aa25.17■■□□□ 1.62
SYNPO-205ENST00000522122 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
SYNPO-205ENST00000522122 SUPT5HO00267 1087 aaKnown RBP22.92■■□□□ 1.26
SYNPO-205ENST00000522122 SHROOM4Q9ULL8 1493 aa22.76■■□□□ 1.23
SYNPO-205ENST00000522122 EHMT2Q96KQ7 1210 aa21.92■■□□□ 1.1
SYNPO-205ENST00000522122 PCGF6Q9BYE7 350 aa21.79■■□□□ 1.08
SYNPO-205ENST00000522122 HRCP23327 699 aa21.55■■□□□ 1.04
SYNPO-205ENST00000522122 FAM9AQ8IZU1 332 aaPredicted RBP21.54■■□□□ 1.04
SYNPO-205ENST00000522122 APLP2Q06481 763 aa21.47■■□□□ 1.03
SYNPO-205ENST00000522122 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
SYNPO-205ENST00000522122 PELP1Q8IZL8 1130 aaKnown RBP21.43■■□□□ 1.02
SYNPO-205ENST00000522122 ZEB1P37275 1124 aaPredicted RBP21.42■■□□□ 1.02
SYNPO-205ENST00000522122 TRIM41Q8WV44 630 aa21.24■□□□□ 0.99
SYNPO-205ENST00000522122 TTBK1Q5TCY1 1321 aaPredicted RBP21.22■□□□□ 0.99
SYNPO-205ENST00000522122 TRIM26Q12899 539 aaPredicted RBP21.21■□□□□ 0.99
SYNPO-205ENST00000522122 ZCCHC6Q5VYS8 1495 aaKnown RBP21.19■□□□□ 0.98
SYNPO-205ENST00000522122 CCER1Q8TC90 406 aaPredicted RBP21.06■□□□□ 0.96
SYNPO-205ENST00000522122 CCDC180Q9P1Z9 1646 aa21.05■□□□□ 0.96
SYNPO-205ENST00000522122 CENPBP07199 599 aaPredicted RBP21.04■□□□□ 0.96
SYNPO-205ENST00000522122 LOC105371045A0A1W2PR82 267 aa21.01■□□□□ 0.95
SYNPO-205ENST00000522122 PPARGC1BQ86YN6 1023 aaKnown RBP20.93■□□□□ 0.94
SYNPO-205ENST00000522122 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.94
SYNPO-205ENST00000522122 UBTFP17480 764 aaKnown RBP20.86■□□□□ 0.93
SYNPO-205ENST00000522122 DCAF1Q9Y4B6 1507 aa20.8■□□□□ 0.92
SYNPO-205ENST00000522122 MYO15BQ96JP2 1530 aa20.7■□□□□ 0.9
SYNPO-205ENST00000522122 ATP1B4Q9UN42 357 aaPredicted RBP20.61■□□□□ 0.89
SYNPO-205ENST00000522122 YTHDC1Q96MU7 727 aaKnown RBP20.54■□□□□ 0.88
SYNPO-205ENST00000522122 ERICH6Q7L0X2 663 aa20.47■□□□□ 0.87
SYNPO-205ENST00000522122 MYT1Q01538 1121 aa20.43■□□□□ 0.86
SYNPO-205ENST00000522122 NEFLP07196 543 aa20.4■□□□□ 0.86
SYNPO-205ENST00000522122 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
SYNPO-205ENST00000522122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.3■□□□□ 0.84
SYNPO-205ENST00000522122 DIEXFQ68CQ4 756 aaKnown RBP20.23■□□□□ 0.83
SYNPO-205ENST00000522122 HNRNPUL2Q1KMD3 747 aaKnown RBP20.19■□□□□ 0.82
SYNPO-205ENST00000522122 ABCC9O60706 1549 aa20.16■□□□□ 0.82
SYNPO-205ENST00000522122 ITGAEP38570 1179 aa20.15■□□□□ 0.82
SYNPO-205ENST00000522122 RSF1Q96T23 1441 aaPredicted RBP20.1■□□□□ 0.81
SYNPO-205ENST00000522122 ACIN1Q9UKV3 1341 aaKnown RBP20.01■□□□□ 0.79
SYNPO-205ENST00000522122 RB1CC1Q8TDY2 1594 aa19.98■□□□□ 0.79
SYNPO-205ENST00000522122 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
SYNPO-205ENST00000522122 ZNF316A6NFI3 1004 aaPredicted RBP19.91■□□□□ 0.78
SYNPO-205ENST00000522122 CSRNP3Q8WYN3 585 aa19.84■□□□□ 0.77
SYNPO-205ENST00000522122 SCAF1Q9H7N4 1312 aaKnown RBP19.83■□□□□ 0.76
SYNPO-205ENST00000522122 POLR3GLQ9BT43 218 aa19.81■□□□□ 0.76
SYNPO-205ENST00000522122 NACADO15069 1562 aa19.8■□□□□ 0.76
SYNPO-205ENST00000522122 NEUROD1Q13562 356 aa19.67■□□□□ 0.74
SYNPO-205ENST00000522122 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
SYNPO-205ENST00000522122 FAM50AQ14320 339 aaKnown RBP19.66■□□□□ 0.74
SYNPO-205ENST00000522122 EEA1Q15075 1411 aa19.66■□□□□ 0.74
SYNPO-205ENST00000522122 CNGB1Q14028 1251 aaPredicted RBP19.65■□□□□ 0.74
SYNPO-205ENST00000522122 CEP162Q5TB80 1403 aa19.64■□□□□ 0.73
SYNPO-205ENST00000522122 DAXXQ9UER7 740 aaPredicted RBP19.62■□□□□ 0.73
SYNPO-205ENST00000522122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.57■□□□□ 0.72
SYNPO-205ENST00000522122 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
SYNPO-205ENST00000522122 GOLGA3Q08378 1498 aa19.57■□□□□ 0.72
SYNPO-205ENST00000522122 MYT1LQ9UL68 1186 aa19.56■□□□□ 0.72
SYNPO-205ENST00000522122 TNIKQ9UKE5 1360 aa19.55■□□□□ 0.72
SYNPO-205ENST00000522122 CLSPNQ9HAW4 1339 aa19.53■□□□□ 0.72
SYNPO-205ENST00000522122 MROH2BQ7Z745 1585 aa19.51■□□□□ 0.71
SYNPO-205ENST00000522122 TRIM52Q96A61 297 aa19.48■□□□□ 0.71
SYNPO-205ENST00000522122 CLIP1P30622 1438 aa19.45■□□□□ 0.7
SYNPO-205ENST00000522122 ANP32CO43423 234 aa19.42■□□□□ 0.7
SYNPO-205ENST00000522122 BCANQ96GW7 911 aa19.4■□□□□ 0.7
SYNPO-205ENST00000522122 CEP164Q9UPV0 1460 aa19.38■□□□□ 0.69
SYNPO-205ENST00000522122 WRNQ14191 1432 aaPredicted RBP eCLIP19.37■□□□□ 0.69
SYNPO-205ENST00000522122 WIZO95785 1651 aa19.37■□□□□ 0.69
SYNPO-205ENST00000522122 MIER1Q8N108 512 aa19.34■□□□□ 0.69
SYNPO-205ENST00000522122 RTL5Q5HYW3 569 aaPredicted RBP19.33■□□□□ 0.69
SYNPO-205ENST00000522122 TOP2AP11388 1531 aaKnown RBP19.31■□□□□ 0.68
SYNPO-205ENST00000522122 ABCC8Q09428 1581 aa19.29■□□□□ 0.68
SYNPO-205ENST00000522122 SOGA1O94964 1423 aa19.28■□□□□ 0.68
SYNPO-205ENST00000522122 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
SYNPO-205ENST00000522122 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
SYNPO-205ENST00000522122 CDK11AQ9UQ88 783 aaPredicted RBP19.23■□□□□ 0.67
SYNPO-205ENST00000522122 ZNF326Q5BKZ1 582 aaKnown RBP19.22■□□□□ 0.67
SYNPO-205ENST00000522122 P3H3Q8IVL6 736 aa19.21■□□□□ 0.67
SYNPO-205ENST00000522122 BAZ1BQ9UIG0 1483 aaKnown RBP19.15■□□□□ 0.66
SYNPO-205ENST00000522122 VPS8Q8N3P4 1428 aa19.11■□□□□ 0.65
SYNPO-205ENST00000522122 SMARCA4P51532 1647 aa19.08■□□□□ 0.64
SYNPO-205ENST00000522122 FBLN2P98095 1184 aa19.03■□□□□ 0.64
SYNPO-205ENST00000522122 FKBP8Q14318 412 aa19.02■□□□□ 0.64
SYNPO-205ENST00000522122 ARID3CA6NKF2 412 aa19.01■□□□□ 0.63
SYNPO-205ENST00000522122 KIF27Q86VH2 1401 aa18.99■□□□□ 0.63
SYNPO-205ENST00000522122 TONSLQ96HA7 1378 aa18.99■□□□□ 0.63
SYNPO-205ENST00000522122 DDX10Q13206 875 aaKnown RBP18.98■□□□□ 0.63
SYNPO-205ENST00000522122 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
SYNPO-205ENST00000522122 ZNF777Q9ULD5 760 aaPredicted RBP18.9■□□□□ 0.62
SYNPO-205ENST00000522122 HNRNPUQ00839 825 aaKnown RBP eCLIP18.89■□□□□ 0.61
SYNPO-205ENST00000522122 CCNB3Q8WWL7 1395 aa18.88■□□□□ 0.61
SYNPO-205ENST00000522122 RUSC2Q8N2Y8 1516 aa18.88■□□□□ 0.61
SYNPO-205ENST00000522122 ANP32AP39687 249 aaKnown RBP18.88■□□□□ 0.61
SYNPO-205ENST00000522122 SUPT16HQ9Y5B9 1047 aaKnown RBP18.87■□□□□ 0.61
SYNPO-205ENST00000522122 CANXP27824 592 aaKnown RBP18.82■□□□□ 0.6
SYNPO-205ENST00000522122 RAPGEF2Q9Y4G8 1499 aa18.8■□□□□ 0.6
SYNPO-205ENST00000522122 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
SYNPO-205ENST00000522122 ZBTB47Q9UFB7 747 aaPredicted RBP18.78■□□□□ 0.6
SYNPO-205ENST00000522122 KIF21BO75037 1637 aa18.77■□□□□ 0.59
SYNPO-205ENST00000522122 MTUS2Q5JR59 1369 aa18.75■□□□□ 0.59
SYNPO-205ENST00000522122 CHIC2Q9UKJ5 165 aa18.74■□□□□ 0.59
SYNPO-205ENST00000522122 FHAD1B1AJZ9 1412 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms