Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
VBP1P61758 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.39□□□□□ -0.27
VBP1P61758 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.39□□□□□ -0.27
VBP1P61758 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
VBP1P61758 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
VBP1P61758 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VBP1P61758 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.39□□□□□ -0.27
VBP1P61758 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
VBP1P61758 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
VBP1P61758 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.39□□□□□ -0.27
VBP1P61758 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
VBP1P61758 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 SAPCD2P3-201ENST00000455031 850 ntBASIC13.38□□□□□ -0.27
VBP1P61758 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.38□□□□□ -0.27
VBP1P61758 AC093827.2-201ENST00000512654 315 ntBASIC13.38□□□□□ -0.27
VBP1P61758 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.38□□□□□ -0.27
VBP1P61758 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.38□□□□□ -0.27
VBP1P61758 AL121772.3-201ENST00000610840 674 ntBASIC13.38□□□□□ -0.27
VBP1P61758 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 STRCP1-201ENST00000509801 5328 ntBASIC13.38□□□□□ -0.27
VBP1P61758 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.38□□□□□ -0.27
VBP1P61758 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 AL157414.3-201ENST00000624276 1954 ntBASIC13.38□□□□□ -0.27
VBP1P61758 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
VBP1P61758 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VBP1P61758 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.37□□□□□ -0.27
VBP1P61758 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
VBP1P61758 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
VBP1P61758 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
VBP1P61758 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
VBP1P61758 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
VBP1P61758 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.37□□□□□ -0.27
VBP1P61758 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
VBP1P61758 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 HSPA8P5-201ENST00000456928 2069 ntBASIC13.37□□□□□ -0.27
VBP1P61758 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 CICP1-201ENST00000416803 2410 ntBASIC13.37□□□□□ -0.27
VBP1P61758 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VBP1P61758 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms