RNA–Protein interactions for RNA: ENST00000002829.7

SEMA3F-201, Transcript of semaphorin 3F, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SEMA3F, Length 3,802 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3F-201ENST00000002829 NISCHQ9Y2I1 1504 aa25.33■■□□□ 1.65
SEMA3F-201ENST00000002829 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.47
SEMA3F-201ENST00000002829 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
SEMA3F-201ENST00000002829 SUPT5HO00267 1087 aaKnown RBP23.82■■□□□ 1.4
SEMA3F-201ENST00000002829 EHMT2Q96KQ7 1210 aa22.91■■□□□ 1.26
SEMA3F-201ENST00000002829 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
SEMA3F-201ENST00000002829 FAM9AQ8IZU1 332 aaPredicted RBP22.37■■□□□ 1.17
SEMA3F-201ENST00000002829 PPARGC1BQ86YN6 1023 aaKnown RBP22.24■■□□□ 1.15
SEMA3F-201ENST00000002829 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
SEMA3F-201ENST00000002829 TTBK1Q5TCY1 1321 aaPredicted RBP22.05■■□□□ 1.12
SEMA3F-201ENST00000002829 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
SEMA3F-201ENST00000002829 HRCP23327 699 aa21.86■■□□□ 1.09
SEMA3F-201ENST00000002829 TRIM41Q8WV44 630 aa21.7■■□□□ 1.06
SEMA3F-201ENST00000002829 RANGAP1P46060 587 aaPredicted RBP21.54■■□□□ 1.04
SEMA3F-201ENST00000002829 MYO15BQ96JP2 1530 aa21.33■■□□□ 1.01
SEMA3F-201ENST00000002829 TRIM26Q12899 539 aaPredicted RBP21.19■□□□□ 0.98
SEMA3F-201ENST00000002829 ZCCHC6Q5VYS8 1495 aaKnown RBP21.16■□□□□ 0.98
SEMA3F-201ENST00000002829 ABCC9O60706 1549 aa21.14■□□□□ 0.97
SEMA3F-201ENST00000002829 CCER1Q8TC90 406 aaPredicted RBP21.13■□□□□ 0.97
SEMA3F-201ENST00000002829 UBTFP17480 764 aaKnown RBP21.08■□□□□ 0.97
SEMA3F-201ENST00000002829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.03■□□□□ 0.96
SEMA3F-201ENST00000002829 YTHDC1Q96MU7 727 aaKnown RBP21.03■□□□□ 0.96
SEMA3F-201ENST00000002829 PABPN1Q86U42 306 aaKnown RBP eCLIP20.96■□□□□ 0.95
SEMA3F-201ENST00000002829 PELP1Q8IZL8 1130 aaKnown RBP20.91■□□□□ 0.94
SEMA3F-201ENST00000002829 APLP2Q06481 763 aa20.79■□□□□ 0.92
SEMA3F-201ENST00000002829 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
SEMA3F-201ENST00000002829 HNRNPUL2Q1KMD3 747 aaKnown RBP20.76■□□□□ 0.91
SEMA3F-201ENST00000002829 SCRIBQ14160 1630 aa20.76■□□□□ 0.91
SEMA3F-201ENST00000002829 ZEB1P37275 1124 aaPredicted RBP20.71■□□□□ 0.91
SEMA3F-201ENST00000002829 ATP1B4Q9UN42 357 aaPredicted RBP20.65■□□□□ 0.9
SEMA3F-201ENST00000002829 GTF3C3Q9Y5Q9 886 aa20.62■□□□□ 0.89
SEMA3F-201ENST00000002829 ITGAEP38570 1179 aa20.6■□□□□ 0.89
SEMA3F-201ENST00000002829 CENPBP07199 599 aaPredicted RBP20.54■□□□□ 0.88
SEMA3F-201ENST00000002829 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
SEMA3F-201ENST00000002829 NEUROD1Q13562 356 aa20.49■□□□□ 0.87
SEMA3F-201ENST00000002829 RSF1Q96T23 1441 aaPredicted RBP20.47■□□□□ 0.87
SEMA3F-201ENST00000002829 DIEXFQ68CQ4 756 aaKnown RBP20.43■□□□□ 0.86
SEMA3F-201ENST00000002829 DCAF1Q9Y4B6 1507 aa20.35■□□□□ 0.85
SEMA3F-201ENST00000002829 CECR2Q9BXF3 1484 aa20.35■□□□□ 0.85
SEMA3F-201ENST00000002829 ACIN1Q9UKV3 1341 aaKnown RBP20.33■□□□□ 0.84
SEMA3F-201ENST00000002829 CSRNP3Q8WYN3 585 aa20.22■□□□□ 0.83
SEMA3F-201ENST00000002829 MYT1Q01538 1121 aa20.15■□□□□ 0.82
SEMA3F-201ENST00000002829 RB1CC1Q8TDY2 1594 aa20.14■□□□□ 0.81
SEMA3F-201ENST00000002829 P3H3Q8IVL6 736 aa20.06■□□□□ 0.8
SEMA3F-201ENST00000002829 CNGB1Q14028 1251 aaPredicted RBP20.03■□□□□ 0.8
SEMA3F-201ENST00000002829 BCANQ96GW7 911 aa20.01■□□□□ 0.79
SEMA3F-201ENST00000002829 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
SEMA3F-201ENST00000002829 FAM50AQ14320 339 aaKnown RBP19.91■□□□□ 0.78
SEMA3F-201ENST00000002829 SOGA1O94964 1423 aa19.91■□□□□ 0.78
SEMA3F-201ENST00000002829 ZNF316A6NFI3 1004 aaPredicted RBP19.9■□□□□ 0.78
SEMA3F-201ENST00000002829 ARID3CA6NKF2 412 aa19.88■□□□□ 0.77
SEMA3F-201ENST00000002829 ABCC8Q09428 1581 aa19.86■□□□□ 0.77
SEMA3F-201ENST00000002829 MIER1Q8N108 512 aa19.86■□□□□ 0.77
SEMA3F-201ENST00000002829 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
SEMA3F-201ENST00000002829 CCDC88BA6NC98 1476 aa19.79■□□□□ 0.76
SEMA3F-201ENST00000002829 WIZO95785 1651 aa19.77■□□□□ 0.76
SEMA3F-201ENST00000002829 HIRIP3Q9BW71 556 aaPredicted RBP19.77■□□□□ 0.75
SEMA3F-201ENST00000002829 POLR3GLQ9BT43 218 aa19.7■□□□□ 0.74
SEMA3F-201ENST00000002829 RUSC2Q8N2Y8 1516 aa19.69■□□□□ 0.74
SEMA3F-201ENST00000002829 CLIP1P30622 1438 aa19.61■□□□□ 0.73
SEMA3F-201ENST00000002829 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.72
SEMA3F-201ENST00000002829 NACADO15069 1562 aa19.57■□□□□ 0.72
SEMA3F-201ENST00000002829 DDX10Q13206 875 aaKnown RBP19.51■□□□□ 0.71
SEMA3F-201ENST00000002829 KANK4Q5T7N3 995 aaPredicted RBP19.5■□□□□ 0.71
SEMA3F-201ENST00000002829 ERICH6Q7L0X2 663 aa19.49■□□□□ 0.71
SEMA3F-201ENST00000002829 TNIKQ9UKE5 1360 aa19.49■□□□□ 0.71
SEMA3F-201ENST00000002829 TRIM52Q96A61 297 aa19.48■□□□□ 0.71
SEMA3F-201ENST00000002829 BAZ1AQ9NRL2 1556 aaPredicted RBP19.47■□□□□ 0.71
SEMA3F-201ENST00000002829 NEFLP07196 543 aa19.44■□□□□ 0.7
SEMA3F-201ENST00000002829 SENP3-EIF4A1A0A087X0R7 540 aa19.42■□□□□ 0.7
SEMA3F-201ENST00000002829 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
SEMA3F-201ENST00000002829 CHIC2Q9UKJ5 165 aa19.41■□□□□ 0.7
SEMA3F-201ENST00000002829 SIN3AQ96ST3 1273 aa19.4■□□□□ 0.7
SEMA3F-201ENST00000002829 ZNF326Q5BKZ1 582 aaKnown RBP19.39■□□□□ 0.69
SEMA3F-201ENST00000002829 FKBP8Q14318 412 aa19.36■□□□□ 0.69
SEMA3F-201ENST00000002829 FBLN2P98095 1184 aa19.36■□□□□ 0.69
SEMA3F-201ENST00000002829 BAZ1BQ9UIG0 1483 aaKnown RBP19.33■□□□□ 0.68
SEMA3F-201ENST00000002829 IRX6P78412 446 aaPredicted RBP19.29■□□□□ 0.68
SEMA3F-201ENST00000002829 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
SEMA3F-201ENST00000002829 SUPT16HQ9Y5B9 1047 aaKnown RBP19.24■□□□□ 0.67
SEMA3F-201ENST00000002829 RAPGEF2Q9Y4G8 1499 aa19.24■□□□□ 0.67
SEMA3F-201ENST00000002829 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
SEMA3F-201ENST00000002829 ZNF777Q9ULD5 760 aaPredicted RBP19.2■□□□□ 0.66
SEMA3F-201ENST00000002829 RRP7BPQ9NSQ0 103 aa19.2■□□□□ 0.66
SEMA3F-201ENST00000002829 ANP32CO43423 234 aa19.18■□□□□ 0.66
SEMA3F-201ENST00000002829 EEA1Q15075 1411 aa19.18■□□□□ 0.66
SEMA3F-201ENST00000002829 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
SEMA3F-201ENST00000002829 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
SEMA3F-201ENST00000002829 VPS8Q8N3P4 1428 aa19.11■□□□□ 0.65
SEMA3F-201ENST00000002829 SMARCA2P51531 1590 aa19.09■□□□□ 0.65
SEMA3F-201ENST00000002829 BCL11AQ9H165 835 aa19.08■□□□□ 0.65
SEMA3F-201ENST00000002829 ANP32EQ9BTT0 268 aa19.06■□□□□ 0.64
SEMA3F-201ENST00000002829 TSHZ2Q9NRE2 1034 aa19.06■□□□□ 0.64
SEMA3F-201ENST00000002829 HNRNPUQ00839 825 aaKnown RBP eCLIP19.06■□□□□ 0.64
SEMA3F-201ENST00000002829 FAM9BQ8IZU0 186 aa19.05■□□□□ 0.64
SEMA3F-201ENST00000002829 MYT1LQ9UL68 1186 aa19.04■□□□□ 0.64
SEMA3F-201ENST00000002829 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
SEMA3F-201ENST00000002829 TONSLQ96HA7 1378 aa19.03■□□□□ 0.64
SEMA3F-201ENST00000002829 SALL2Q9Y467 1007 aaPredicted RBP19.02■□□□□ 0.64
SEMA3F-201ENST00000002829 CUX2O14529 1486 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms