RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 NISCHQ9Y2I1 1504 aa43.97■■■■■ 4.63
HDDC3-201ENST00000330334 CCDC180Q9P1Z9 1646 aa39.27■■■■□ 3.88
HDDC3-201ENST00000330334 ABCC9O60706 1549 aa38.93■■■■□ 3.82
HDDC3-201ENST00000330334 RB1CC1Q8TDY2 1594 aa37.25■■■■□ 3.55
HDDC3-201ENST00000330334 NACADO15069 1562 aa37.12■■■■□ 3.53
HDDC3-201ENST00000330334 DCAF8L2P0C7V8 631 aa36.93■■■■□ 3.5
HDDC3-201ENST00000330334 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
HDDC3-201ENST00000330334 ZCCHC6Q5VYS8 1495 aaKnown RBP36.5■■■■□ 3.43
HDDC3-201ENST00000330334 DCAF1Q9Y4B6 1507 aa36.42■■■■□ 3.42
HDDC3-201ENST00000330334 PABPN1Q86U42 306 aaKnown RBP eCLIP36.33■■■■□ 3.41
HDDC3-201ENST00000330334 DNAJC5BQ9UF47 199 aa36.3■■■■□ 3.4
HDDC3-201ENST00000330334 UNC13AQ9UPW8 1703 aa36.27■■■■□ 3.4
HDDC3-201ENST00000330334 BICRAQ9NZM4 1560 aa36.13■■■■□ 3.37
HDDC3-201ENST00000330334 SHROOM4Q9ULL8 1493 aa35.8■■■■□ 3.32
HDDC3-201ENST00000330334 SCRIBQ14160 1630 aa35.72■■■■□ 3.31
HDDC3-201ENST00000330334 EIF4G1Q04637 1599 aaKnown RBP35.22■■■■□ 3.23
HDDC3-201ENST00000330334 CC2D2AQ9P2K1 1620 aa35.18■■■■□ 3.22
HDDC3-201ENST00000330334 CECR2Q9BXF3 1484 aa35.09■■■■□ 3.21
HDDC3-201ENST00000330334 NCAPD3P42695 1498 aa34.31■■■■□ 3.08
HDDC3-201ENST00000330334 ATAD2BQ9ULI0 1458 aa34.2■■■■□ 3.06
HDDC3-201ENST00000330334 SMARCA4P51532 1647 aa34.17■■■■□ 3.06
HDDC3-201ENST00000330334 SMARCA2P51531 1590 aa34.11■■■■□ 3.05
HDDC3-201ENST00000330334 BAZ1AQ9NRL2 1556 aaPredicted RBP34.11■■■■□ 3.05
HDDC3-201ENST00000330334 HMGXB3Q12766 1538 aa34.02■■■■□ 3.04
HDDC3-201ENST00000330334 PEG3Q9GZU2 1588 aa33.93■■■■□ 3.02
HDDC3-201ENST00000330334 BAZ1BQ9UIG0 1483 aaKnown RBP33.85■■■■□ 3.01
HDDC3-201ENST00000330334 MROH2BQ7Z745 1585 aa33.84■■■■□ 3.01
HDDC3-201ENST00000330334 ERCC6Q03468 1493 aa33.61■■■□□ 2.97
HDDC3-201ENST00000330334 NESP48681 1621 aa33.52■■■□□ 2.96
HDDC3-201ENST00000330334 CUX2O14529 1486 aa33.51■■■□□ 2.96
HDDC3-201ENST00000330334 LAMC3Q9Y6N6 1575 aa33.41■■■□□ 2.94
HDDC3-201ENST00000330334 WIZO95785 1651 aa33.39■■■□□ 2.94
HDDC3-201ENST00000330334 RSF1Q96T23 1441 aaPredicted RBP33.32■■■□□ 2.92
HDDC3-201ENST00000330334 CADPSQ9ULU8 1353 aa33.27■■■□□ 2.92
HDDC3-201ENST00000330334 PDS5BQ9NTI5 1447 aa33.26■■■□□ 2.91
HDDC3-201ENST00000330334 DNAJC5Q9H3Z4 198 aa33.17■■■□□ 2.9
HDDC3-201ENST00000330334 THOC2Q8NI27 1593 aaKnown RBP33.11■■■□□ 2.89
HDDC3-201ENST00000330334 TOP2AP11388 1531 aaKnown RBP33.06■■■□□ 2.88
HDDC3-201ENST00000330334 KIF21AQ7Z4S6 1674 aa33.04■■■□□ 2.88
HDDC3-201ENST00000330334 CFTRP13569 1480 aa32.94■■■□□ 2.86
HDDC3-201ENST00000330334 MRC2Q9UBG0 1479 aa32.89■■■□□ 2.86
HDDC3-201ENST00000330334 FANCD2Q9BXW9 1451 aa32.82■■■□□ 2.84
HDDC3-201ENST00000330334 CEP164Q9UPV0 1460 aa32.82■■■□□ 2.84
HDDC3-201ENST00000330334 WDR62O43379 1518 aa32.8■■■□□ 2.84
HDDC3-201ENST00000330334 CCDC88BA6NC98 1476 aa32.71■■■□□ 2.83
HDDC3-201ENST00000330334 URB2Q14146 1524 aaKnown RBP32.51■■■□□ 2.8
HDDC3-201ENST00000330334 PRDM2Q13029 1718 aa32.48■■■□□ 2.79
HDDC3-201ENST00000330334 ABCC8Q09428 1581 aa32.28■■■□□ 2.76
HDDC3-201ENST00000330334 TOPBP1Q92547 1522 aa32.23■■■□□ 2.75
HDDC3-201ENST00000330334 IFT140Q96RY7 1462 aa32.19■■■□□ 2.74
HDDC3-201ENST00000330334 DNMBPQ6XZF7 1577 aa32.13■■■□□ 2.73
HDDC3-201ENST00000330334 OSCARQ8IYS5 282 aa32.08■■■□□ 2.73
HDDC3-201ENST00000330334 ZNF608Q9ULD9 1512 aaPredicted RBP32.05■■■□□ 2.72
HDDC3-201ENST00000330334 SUPT5HO00267 1087 aaKnown RBP32.01■■■□□ 2.71
HDDC3-201ENST00000330334 POLA1P09884 1462 aaPredicted RBP31.92■■■□□ 2.7
HDDC3-201ENST00000330334 TARBP1Q13395 1621 aaKnown RBP31.9■■■□□ 2.7
HDDC3-201ENST00000330334 EIF4G3O43432 1585 aaKnown RBP31.84■■■□□ 2.69
HDDC3-201ENST00000330334 SOGA1O94964 1423 aa31.83■■■□□ 2.69
HDDC3-201ENST00000330334 AQRO60306 1485 aaKnown RBP eCLIP31.82■■■□□ 2.684e-8■■■■■ 34.1
HDDC3-201ENST00000330334 CUX1P39880 1505 aa31.78■■■□□ 2.68
HDDC3-201ENST00000330334 RAD54L2Q9Y4B4 1467 aa31.77■■■□□ 2.68
HDDC3-201ENST00000330334 FGD5Q6ZNL6 1462 aa31.75■■■□□ 2.67
HDDC3-201ENST00000330334 TRIM41Q8WV44 630 aa31.71■■■□□ 2.67
HDDC3-201ENST00000330334 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
HDDC3-201ENST00000330334 WDR97A6NE52 1622 aa31.67■■■□□ 2.66
HDDC3-201ENST00000330334 FBLN2P98095 1184 aa31.53■■■□□ 2.64
HDDC3-201ENST00000330334 GRIN2BQ13224 1484 aa31.51■■■□□ 2.63
HDDC3-201ENST00000330334 CHD1O14646 1710 aa31.49■■■□□ 2.63
HDDC3-201ENST00000330334 SNAPC4Q5SXM2 1469 aa31.48■■■□□ 2.63
HDDC3-201ENST00000330334 MAGI1Q96QZ7 1491 aaPredicted RBP31.48■■■□□ 2.63
HDDC3-201ENST00000330334 RIMBP3CA6NJZ7 1639 aa31.47■■■□□ 2.63
HDDC3-201ENST00000330334 RIMBP3BA6NNM3 1639 aa31.47■■■□□ 2.63
HDDC3-201ENST00000330334 RIMBP3Q9UFD9 1639 aa31.47■■■□□ 2.63
HDDC3-201ENST00000330334 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
HDDC3-201ENST00000330334 ARHGEF11O15085 1522 aa31.45■■■□□ 2.63
HDDC3-201ENST00000330334 GAPVD1Q14C86 1478 aa31.43■■■□□ 2.62
HDDC3-201ENST00000330334 WRNQ14191 1432 aaPredicted RBP eCLIP31.42■■■□□ 2.62
HDDC3-201ENST00000330334 CHMP7Q8WUX9 453 aaPredicted RBP31.42■■■□□ 2.62
HDDC3-201ENST00000330334 TOP2BQ02880 1626 aa31.36■■■□□ 2.61
HDDC3-201ENST00000330334 SYNJ2O15056 1496 aa31.36■■■□□ 2.61
HDDC3-201ENST00000330334 BIVM-ERCC5R4GMW8 1640 aa31.34■■■□□ 2.61
HDDC3-201ENST00000330334 ABCA5Q8WWZ7 1642 aa31.31■■■□□ 2.6
HDDC3-201ENST00000330334 SYNJ1O43426 1573 aa31.28■■■□□ 2.6
HDDC3-201ENST00000330334 PBRM1Q86U86 1689 aa31.26■■■□□ 2.6
HDDC3-201ENST00000330334 CLASP1Q7Z460 1538 aa31.25■■■□□ 2.59
HDDC3-201ENST00000330334 CYB5RLQ6IPT4 315 aa31.25■■■□□ 2.59
HDDC3-201ENST00000330334 ARAP1Q96P48 1450 aa31.16■■■□□ 2.58
HDDC3-201ENST00000330334 ERICH3Q5RHP9 1530 aa31.08■■■□□ 2.57
HDDC3-201ENST00000330334 GRIN2AQ12879 1464 aa31.08■■■□□ 2.57
HDDC3-201ENST00000330334 FHAD1B1AJZ9 1412 aa31.07■■■□□ 2.56
HDDC3-201ENST00000330334 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
HDDC3-201ENST00000330334 NUP160Q12769 1436 aa31■■■□□ 2.55
HDDC3-201ENST00000330334 CEP170Q5SW79 1584 aa30.89■■■□□ 2.54
HDDC3-201ENST00000330334 KIF27Q86VH2 1401 aa30.82■■■□□ 2.52
HDDC3-201ENST00000330334 IGF1RP08069 1367 aa30.79■■■□□ 2.52
HDDC3-201ENST00000330334 SHROOM2Q13796 1616 aa30.76■■■□□ 2.52
HDDC3-201ENST00000330334 TRHP20396 242 aaPredicted RBP30.76■■■□□ 2.51
HDDC3-201ENST00000330334 ERCC6L2Q5T890 1561 aa30.72■■■□□ 2.51
HDDC3-201ENST00000330334 JPH4Q96JJ6 628 aa30.72■■■□□ 2.51
HDDC3-201ENST00000330334 PRG4Q92954 1404 aaPredicted RBP30.64■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms