Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TPM1P09493 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 MIR574-201ENST00000385209 96 ntBASIC16.49■□□□□ 0.23
TPM1P09493 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.49■□□□□ 0.23
TPM1P09493 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.49■□□□□ 0.23
TPM1P09493 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.49■□□□□ 0.23
TPM1P09493 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
TPM1P09493 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.49■□□□□ 0.23
TPM1P09493 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 MIR3687-2-201ENST00000577708 61 ntBASIC16.49■□□□□ 0.23
TPM1P09493 MIR3687-1-201ENST00000614492 61 ntBASIC16.49■□□□□ 0.23
TPM1P09493 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.49■□□□□ 0.23
TPM1P09493 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 AGGF1P1-201ENST00000509500 2073 ntBASIC16.49■□□□□ 0.23
TPM1P09493 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TPM1P09493 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.48■□□□□ 0.23
TPM1P09493 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.48■□□□□ 0.23
TPM1P09493 AL512361.1-201ENST00000554200 418 ntBASIC16.48■□□□□ 0.23
TPM1P09493 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
TPM1P09493 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.48■□□□□ 0.23
TPM1P09493 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.48■□□□□ 0.23
TPM1P09493 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 STK40-201ENST00000359297 4837 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM1P09493 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 AC023090.2-201ENST00000625182 2110 ntBASIC16.48■□□□□ 0.23
TPM1P09493 AL356585.2-201ENST00000625078 2396 ntBASIC16.48■□□□□ 0.23
TPM1P09493 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM1P09493 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms