RNA–Protein interactions for RNA: ENST00000616995.4

PRKD1-209, Transcript of protein kinase D1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PRKD1, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKD1-209ENST00000616995 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.23
PRKD1-209ENST00000616995 SHROOM4Q9ULL8 1493 aa26■■□□□ 1.75
PRKD1-209ENST00000616995 DCAF8L2P0C7V8 631 aa25.97■■□□□ 1.75
PRKD1-209ENST00000616995 SUPT5HO00267 1087 aaKnown RBP25.6■■□□□ 1.69
PRKD1-209ENST00000616995 ZCCHC6Q5VYS8 1495 aaKnown RBP24.34■■□□□ 1.49
PRKD1-209ENST00000616995 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.45
PRKD1-209ENST00000616995 CCDC180Q9P1Z9 1646 aa24.13■■□□□ 1.45
PRKD1-209ENST00000616995 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
PRKD1-209ENST00000616995 LOC105371045A0A1W2PR82 267 aa23.87■■□□□ 1.41
PRKD1-209ENST00000616995 FAM9AQ8IZU1 332 aaPredicted RBP23.87■■□□□ 1.41
PRKD1-209ENST00000616995 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
PRKD1-209ENST00000616995 ABCC9O60706 1549 aa23.76■■□□□ 1.39
PRKD1-209ENST00000616995 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
PRKD1-209ENST00000616995 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
PRKD1-209ENST00000616995 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
PRKD1-209ENST00000616995 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
PRKD1-209ENST00000616995 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
PRKD1-209ENST00000616995 TTBK1Q5TCY1 1321 aaPredicted RBP23.22■■□□□ 1.31
PRKD1-209ENST00000616995 HRCP23327 699 aa23.21■■□□□ 1.31
PRKD1-209ENST00000616995 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.3
PRKD1-209ENST00000616995 PABPN1Q86U42 306 aaKnown RBP eCLIP23.13■■□□□ 1.29
PRKD1-209ENST00000616995 CECR2Q9BXF3 1484 aa23■■□□□ 1.27
PRKD1-209ENST00000616995 TRIM26Q12899 539 aaPredicted RBP22.95■■□□□ 1.26
PRKD1-209ENST00000616995 RANGAP1P46060 587 aaPredicted RBP22.84■■□□□ 1.25
PRKD1-209ENST00000616995 RB1CC1Q8TDY2 1594 aa22.83■■□□□ 1.25
PRKD1-209ENST00000616995 MROH2BQ7Z745 1585 aa22.73■■□□□ 1.23
PRKD1-209ENST00000616995 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
PRKD1-209ENST00000616995 NACADO15069 1562 aa22.7■■□□□ 1.22
PRKD1-209ENST00000616995 WIZO95785 1651 aa22.56■■□□□ 1.2
PRKD1-209ENST00000616995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.5■■□□□ 1.19
PRKD1-209ENST00000616995 CCER1Q8TC90 406 aaPredicted RBP22.49■■□□□ 1.19
PRKD1-209ENST00000616995 ZEB1P37275 1124 aaPredicted RBP22.31■■□□□ 1.16
PRKD1-209ENST00000616995 ABCC8Q09428 1581 aa22.3■■□□□ 1.16
PRKD1-209ENST00000616995 BAZ1AQ9NRL2 1556 aaPredicted RBP22.29■■□□□ 1.16
PRKD1-209ENST00000616995 CSRNP3Q8WYN3 585 aa22.25■■□□□ 1.15
PRKD1-209ENST00000616995 APLP2Q06481 763 aa22.22■■□□□ 1.15
PRKD1-209ENST00000616995 CCDC88BA6NC98 1476 aa22.22■■□□□ 1.15
PRKD1-209ENST00000616995 HNRNPUL2Q1KMD3 747 aaKnown RBP22.19■■□□□ 1.14
PRKD1-209ENST00000616995 SOGA1O94964 1423 aa22.18■■□□□ 1.14
PRKD1-209ENST00000616995 SMARCA4P51532 1647 aa22.03■■□□□ 1.12
PRKD1-209ENST00000616995 RUSC2Q8N2Y8 1516 aa22.03■■□□□ 1.12
PRKD1-209ENST00000616995 TOP2AP11388 1531 aaKnown RBP21.99■■□□□ 1.11
PRKD1-209ENST00000616995 CEP162Q5TB80 1403 aa21.97■■□□□ 1.11
PRKD1-209ENST00000616995 ATP1B4Q9UN42 357 aaPredicted RBP21.94■■□□□ 1.1
PRKD1-209ENST00000616995 WRNQ14191 1432 aaPredicted RBP eCLIP21.93■■□□□ 1.1
PRKD1-209ENST00000616995 ITGAEP38570 1179 aa21.91■■□□□ 1.1
PRKD1-209ENST00000616995 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
PRKD1-209ENST00000616995 BAZ1BQ9UIG0 1483 aaKnown RBP21.86■■□□□ 1.09
PRKD1-209ENST00000616995 YTHDC1Q96MU7 727 aaKnown RBP21.81■■□□□ 1.08
PRKD1-209ENST00000616995 UNC13AQ9UPW8 1703 aa21.77■■□□□ 1.08
PRKD1-209ENST00000616995 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
PRKD1-209ENST00000616995 DIEXFQ68CQ4 756 aaKnown RBP21.74■■□□□ 1.07
PRKD1-209ENST00000616995 ATAD2BQ9ULI0 1458 aa21.72■■□□□ 1.07
PRKD1-209ENST00000616995 BICRAQ9NZM4 1560 aa21.7■■□□□ 1.06
PRKD1-209ENST00000616995 GOLGA3Q08378 1498 aa21.69■■□□□ 1.06
PRKD1-209ENST00000616995 CLIP1P30622 1438 aa21.68■■□□□ 1.06
PRKD1-209ENST00000616995 P3H3Q8IVL6 736 aa21.68■■□□□ 1.06
PRKD1-209ENST00000616995 EEA1Q15075 1411 aa21.6■■□□□ 1.05
PRKD1-209ENST00000616995 CEP164Q9UPV0 1460 aa21.53■■□□□ 1.04
PRKD1-209ENST00000616995 RAPGEF2Q9Y4G8 1499 aa21.53■■□□□ 1.04
PRKD1-209ENST00000616995 EIF4G1Q04637 1599 aaKnown RBP21.52■■□□□ 1.04
PRKD1-209ENST00000616995 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
PRKD1-209ENST00000616995 SCAF1Q9H7N4 1312 aaKnown RBP21.45■■□□□ 1.02
PRKD1-209ENST00000616995 ZNF316A6NFI3 1004 aaPredicted RBP21.45■■□□□ 1.02
PRKD1-209ENST00000616995 CENPBP07199 599 aaPredicted RBP21.44■■□□□ 1.02
PRKD1-209ENST00000616995 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
PRKD1-209ENST00000616995 FAM50AQ14320 339 aaKnown RBP21.42■■□□□ 1.02
PRKD1-209ENST00000616995 NEUROD1Q13562 356 aa21.4■■□□□ 1.02
PRKD1-209ENST00000616995 VPS8Q8N3P4 1428 aa21.32■■□□□ 1
PRKD1-209ENST00000616995 GTF3C3Q9Y5Q9 886 aa21.32■■□□□ 1
PRKD1-209ENST00000616995 ARID3CA6NKF2 412 aa21.3■■□□□ 1
PRKD1-209ENST00000616995 KIF27Q86VH2 1401 aa21.29■■□□□ 1
PRKD1-209ENST00000616995 ACIN1Q9UKV3 1341 aaKnown RBP21.28■■□□□ 1
PRKD1-209ENST00000616995 MIER1Q8N108 512 aa21.25■□□□□ 0.99
PRKD1-209ENST00000616995 CUX2O14529 1486 aa21.24■□□□□ 0.99
PRKD1-209ENST00000616995 PEG3Q9GZU2 1588 aa21.17■□□□□ 0.98
PRKD1-209ENST00000616995 NCAPD3P42695 1498 aa21.15■□□□□ 0.98
PRKD1-209ENST00000616995 KIF21BO75037 1637 aa21.12■□□□□ 0.97
PRKD1-209ENST00000616995 CARMIL1Q5VZK9 1371 aa21.11■□□□□ 0.97
PRKD1-209ENST00000616995 CUX1P39880 1505 aa21.1■□□□□ 0.97
PRKD1-209ENST00000616995 CADPSQ9ULU8 1353 aa21.09■□□□□ 0.97
PRKD1-209ENST00000616995 HIRIP3Q9BW71 556 aaPredicted RBP21.08■□□□□ 0.96
PRKD1-209ENST00000616995 DNAJC5BQ9UF47 199 aa21.08■□□□□ 0.96
PRKD1-209ENST00000616995 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
PRKD1-209ENST00000616995 ARAP1Q96P48 1450 aa21.03■□□□□ 0.96
PRKD1-209ENST00000616995 IGF1RP08069 1367 aa21.01■□□□□ 0.95
PRKD1-209ENST00000616995 CFTRP13569 1480 aa21■□□□□ 0.95
PRKD1-209ENST00000616995 SIN3AQ96ST3 1273 aa20.99■□□□□ 0.95
PRKD1-209ENST00000616995 TDRD9Q8NDG6 1382 aaKnown RBP20.98■□□□□ 0.95
PRKD1-209ENST00000616995 PRXQ9BXM0 1461 aa20.98■□□□□ 0.95
PRKD1-209ENST00000616995 CCNB3Q8WWL7 1395 aa20.96■□□□□ 0.95
PRKD1-209ENST00000616995 RAD54L2Q9Y4B4 1467 aa20.96■□□□□ 0.95
PRKD1-209ENST00000616995 NESP48681 1621 aa20.95■□□□□ 0.94
PRKD1-209ENST00000616995 FGD5Q6ZNL6 1462 aa20.95■□□□□ 0.94
PRKD1-209ENST00000616995 CHIC2Q9UKJ5 165 aa20.93■□□□□ 0.94
PRKD1-209ENST00000616995 FBLN2P98095 1184 aa20.92■□□□□ 0.94
PRKD1-209ENST00000616995 HMGXB3Q12766 1538 aa20.9■□□□□ 0.94
PRKD1-209ENST00000616995 FANCD2Q9BXW9 1451 aa20.89■□□□□ 0.93
PRKD1-209ENST00000616995 FHOD3Q2V2M9 1422 aa20.89■□□□□ 0.93
PRKD1-209ENST00000616995 DHX57Q6P158 1386 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms