RNA–Protein interactions for RNA: ENST00000538786.1

ATL3-203, Transcript of atlastin GTPase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene ATL3, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-203ENST00000538786 NISCHQ9Y2I1 1504 aa32.79■■■□□ 2.84
ATL3-203ENST00000538786 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
ATL3-203ENST00000538786 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
ATL3-203ENST00000538786 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
ATL3-203ENST00000538786 DCAF8L2P0C7V8 631 aa27.01■■□□□ 1.91
ATL3-203ENST00000538786 SHROOM4Q9ULL8 1493 aa27.01■■□□□ 1.91
ATL3-203ENST00000538786 MYO15BQ96JP2 1530 aa26.66■■□□□ 1.86
ATL3-203ENST00000538786 ABCC9O60706 1549 aa26.61■■□□□ 1.85
ATL3-203ENST00000538786 NACADO15069 1562 aa26.4■■□□□ 1.82
ATL3-203ENST00000538786 SCRIBQ14160 1630 aa26.18■■□□□ 1.78
ATL3-203ENST00000538786 SUPT5HO00267 1087 aaKnown RBP26.16■■□□□ 1.78
ATL3-203ENST00000538786 RB1CC1Q8TDY2 1594 aa26.09■■□□□ 1.77
ATL3-203ENST00000538786 RSF1Q96T23 1441 aaPredicted RBP25.58■■□□□ 1.69
ATL3-203ENST00000538786 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.67
ATL3-203ENST00000538786 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
ATL3-203ENST00000538786 MROH2BQ7Z745 1585 aa25.35■■□□□ 1.65
ATL3-203ENST00000538786 BICRAQ9NZM4 1560 aa25.3■■□□□ 1.64
ATL3-203ENST00000538786 BAZ1AQ9NRL2 1556 aaPredicted RBP25.29■■□□□ 1.64
ATL3-203ENST00000538786 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
ATL3-203ENST00000538786 PABPN1Q86U42 306 aaKnown RBP eCLIP25.19■■□□□ 1.62
ATL3-203ENST00000538786 WIZO95785 1651 aa25.13■■□□□ 1.61
ATL3-203ENST00000538786 SMARCA4P51532 1647 aa25.12■■□□□ 1.61
ATL3-203ENST00000538786 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
ATL3-203ENST00000538786 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
ATL3-203ENST00000538786 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
ATL3-203ENST00000538786 CCDC88BA6NC98 1476 aa24.66■■□□□ 1.54
ATL3-203ENST00000538786 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
ATL3-203ENST00000538786 EIF4G1Q04637 1599 aaKnown RBP24.59■■□□□ 1.53
ATL3-203ENST00000538786 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
ATL3-203ENST00000538786 BAZ1BQ9UIG0 1483 aaKnown RBP24.53■■□□□ 1.52
ATL3-203ENST00000538786 NCAPD3P42695 1498 aa24.39■■□□□ 1.49
ATL3-203ENST00000538786 HMGXB3Q12766 1538 aa24.36■■□□□ 1.49
ATL3-203ENST00000538786 LOC105371045A0A1W2PR82 267 aa24.25■■□□□ 1.47
ATL3-203ENST00000538786 ABCC8Q09428 1581 aa24.24■■□□□ 1.47
ATL3-203ENST00000538786 FAM9AQ8IZU1 332 aaPredicted RBP24.13■■□□□ 1.45
ATL3-203ENST00000538786 WRNQ14191 1432 aaPredicted RBP eCLIP24.07■■□□□ 1.44
ATL3-203ENST00000538786 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
ATL3-203ENST00000538786 CFTRP13569 1480 aa23.94■■□□□ 1.42
ATL3-203ENST00000538786 SYNJ1O43426 1573 aa23.93■■□□□ 1.42
ATL3-203ENST00000538786 EEA1Q15075 1411 aa23.89■■□□□ 1.42
ATL3-203ENST00000538786 SOGA1O94964 1423 aa23.88■■□□□ 1.41
ATL3-203ENST00000538786 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
ATL3-203ENST00000538786 CADPSQ9ULU8 1353 aa23.79■■□□□ 1.4
ATL3-203ENST00000538786 EHMT2Q96KQ7 1210 aa23.78■■□□□ 1.4
ATL3-203ENST00000538786 RUSC2Q8N2Y8 1516 aa23.76■■□□□ 1.39
ATL3-203ENST00000538786 BIVM-ERCC5R4GMW8 1640 aa23.75■■□□□ 1.39
ATL3-203ENST00000538786 CSRNP3Q8WYN3 585 aa23.75■■□□□ 1.39
ATL3-203ENST00000538786 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
ATL3-203ENST00000538786 CUX1P39880 1505 aa23.68■■□□□ 1.38
ATL3-203ENST00000538786 TNIKQ9UKE5 1360 aa23.58■■□□□ 1.36
ATL3-203ENST00000538786 GOLGA3Q08378 1498 aa23.58■■□□□ 1.36
ATL3-203ENST00000538786 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
ATL3-203ENST00000538786 KIF21BO75037 1637 aa23.54■■□□□ 1.36
ATL3-203ENST00000538786 DNAJC5BQ9UF47 199 aa23.53■■□□□ 1.36
ATL3-203ENST00000538786 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
ATL3-203ENST00000538786 PCGF6Q9BYE7 350 aa23.5■■□□□ 1.35
ATL3-203ENST00000538786 UBTFP17480 764 aaKnown RBP23.48■■□□□ 1.35
ATL3-203ENST00000538786 LAMC3Q9Y6N6 1575 aa23.47■■□□□ 1.35
ATL3-203ENST00000538786 CEP162Q5TB80 1403 aa23.47■■□□□ 1.35
ATL3-203ENST00000538786 NESP48681 1621 aa23.46■■□□□ 1.35
ATL3-203ENST00000538786 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
ATL3-203ENST00000538786 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
ATL3-203ENST00000538786 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
ATL3-203ENST00000538786 RAPGEF2Q9Y4G8 1499 aa23.37■■□□□ 1.33
ATL3-203ENST00000538786 PRXQ9BXM0 1461 aa23.35■■□□□ 1.33
ATL3-203ENST00000538786 DNMBPQ6XZF7 1577 aa23.35■■□□□ 1.33
ATL3-203ENST00000538786 ERICH3Q5RHP9 1530 aa23.34■■□□□ 1.33
ATL3-203ENST00000538786 PDS5BQ9NTI5 1447 aa23.31■■□□□ 1.32
ATL3-203ENST00000538786 TOPBP1Q92547 1522 aa23.3■■□□□ 1.32
ATL3-203ENST00000538786 CUX2O14529 1486 aa23.29■■□□□ 1.32
ATL3-203ENST00000538786 CLIP1P30622 1438 aa23.22■■□□□ 1.31
ATL3-203ENST00000538786 POLA1P09884 1462 aaPredicted RBP23.22■■□□□ 1.31
ATL3-203ENST00000538786 IGF1RP08069 1367 aa23.2■■□□□ 1.31
ATL3-203ENST00000538786 URB2Q14146 1524 aaKnown RBP23.2■■□□□ 1.3
ATL3-203ENST00000538786 ABCA10Q8WWZ4 1543 aa23.17■■□□□ 1.3
ATL3-203ENST00000538786 RAD54L2Q9Y4B4 1467 aa23.15■■□□□ 1.3
ATL3-203ENST00000538786 KIF21AQ7Z4S6 1674 aa23.13■■□□□ 1.29
ATL3-203ENST00000538786 HRCP23327 699 aa23.1■■□□□ 1.29
ATL3-203ENST00000538786 PPARGC1BQ86YN6 1023 aaKnown RBP23.09■■□□□ 1.29
ATL3-203ENST00000538786 CARMIL1Q5VZK9 1371 aa23.08■■□□□ 1.29
ATL3-203ENST00000538786 VPS8Q8N3P4 1428 aa23.06■■□□□ 1.28
ATL3-203ENST00000538786 WDR97A6NE52 1622 aa23.02■■□□□ 1.28
ATL3-203ENST00000538786 RANGAP1P46060 587 aaPredicted RBP23■■□□□ 1.27
ATL3-203ENST00000538786 MRC2Q9UBG0 1479 aa22.99■■□□□ 1.27
ATL3-203ENST00000538786 ARAP1Q96P48 1450 aa22.94■■□□□ 1.26
ATL3-203ENST00000538786 CUL7Q14999 1698 aa22.94■■□□□ 1.26
ATL3-203ENST00000538786 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
ATL3-203ENST00000538786 TDRD9Q8NDG6 1382 aaKnown RBP22.91■■□□□ 1.26
ATL3-203ENST00000538786 TARBP1Q13395 1621 aaKnown RBP22.91■■□□□ 1.26
ATL3-203ENST00000538786 GAPVD1Q14C86 1478 aa22.9■■□□□ 1.26
ATL3-203ENST00000538786 ARHGAP35Q9NRY4 1499 aa22.88■■□□□ 1.25
ATL3-203ENST00000538786 APLP2Q06481 763 aa22.85■■□□□ 1.25
ATL3-203ENST00000538786 WDR62O43379 1518 aa22.84■■□□□ 1.25
ATL3-203ENST00000538786 TTBK1Q5TCY1 1321 aaPredicted RBP22.84■■□□□ 1.25
ATL3-203ENST00000538786 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
ATL3-203ENST00000538786 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
ATL3-203ENST00000538786 CTTNBP2Q8WZ74 1663 aa22.7■■□□□ 1.22
ATL3-203ENST00000538786 AQRO60306 1485 aaKnown RBP eCLIP22.7■■□□□ 1.222e-6■■■■■ 28.3
ATL3-203ENST00000538786 PBRM1Q86U86 1689 aa22.68■■□□□ 1.22
ATL3-203ENST00000538786 EFCAB5A4FU69 1503 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms