Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 MEIS3P1-201ENST00000495167 958 ntBASIC11.49□□□□□ -0.57
HLA-DMBP28068 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 AC092337.1-201ENST00000568699 1129 ntBASIC11.49□□□□□ -0.57
HLA-DMBP28068 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 AC004840.1-201ENST00000636359 365 ntBASIC11.49□□□□□ -0.57
HLA-DMBP28068 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PTENP1-202ENST00000532280 3996 ntBASIC11.49□□□□□ -0.57
HLA-DMBP28068 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ABR-205ENST00000544583 5595 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DMBP28068 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DMBP28068 AL137783.1-201ENST00000623494 1896 ntBASIC11.49□□□□□ -0.57
HLA-DMBP28068 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC006504.5-208ENST00000588784 2401 ntBASIC11.48□□□□□ -0.57
HLA-DMBP28068 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC009477.1-201ENST00000452936 217 ntBASIC11.48□□□□□ -0.57
HLA-DMBP28068 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DMBP28068 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.48□□□□□ -0.57
HLA-DMBP28068 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms