Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZAN-207ENST00000620596 8396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HMGB3O15347 SLC45A4-203ENST00000519067 7483 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 GREB1L-202ENST00000424526 6052 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.16□□□□□ -0.46
HMGB3O15347 ZKSCAN3-203ENST00000377255 4799 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 LINC01973-201ENST00000374983 4678 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 CLTC-202ENST00000393043 5292 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 AC011474.4-201ENST00000623523 2076 ntBASIC12.16□□□□□ -0.46
HMGB3O15347 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 RNPS1P1-201ENST00000507437 918 ntBASIC12.16□□□□□ -0.46
HMGB3O15347 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HMGB3O15347 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC12.16□□□□□ -0.46
HMGB3O15347 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 MIR3652-201ENST00000579335 131 ntBASIC12.16□□□□□ -0.46
HMGB3O15347 AC024267.1-201ENST00000582320 895 ntBASIC12.16□□□□□ -0.46
HMGB3O15347 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC12.16□□□□□ -0.46
HMGB3O15347 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 VPS8-227ENST00000625842 4969 ntAPPRIS P4 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 SLC26A2-201ENST00000286298 8080 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HMGB3O15347 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HMGB3O15347 DOCK4-204ENST00000428084 7997 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HMGB3O15347 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.16□□□□□ -0.46
HMGB3O15347 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HMGB3O15347 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.16□□□□□ -0.46
HMGB3O15347 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
HMGB3O15347 POLE-207ENST00000535270 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
HMGB3O15347 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 RGPD8-203ENST00000409750 5544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
HMGB3O15347 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 AC084364.1-201ENST00000551967 1556 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 AL607033.1-201ENST00000623900 1599 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 AC012313.8-201ENST00000595059 5402 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
HMGB3O15347 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
HMGB3O15347 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 IGLL3P-201ENST00000412472 434 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.15□□□□□ -0.46
HMGB3O15347 TSPY19P-201ENST00000418461 509 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 TSPY18P-201ENST00000441642 509 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms