RNA–Protein interactions for RNA: ENST00000625842.2

VPS8-227, Transcript of VPS8, CORVET complex subunit, humanhuman

APPRIS P4 TSL 5 BASIC

Gene VPS8, Length 4,969 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-227ENST00000625842 DCAF8L2P0C7V8 631 aa19.78■□□□□ 0.76
VPS8-227ENST00000625842 FAM9AQ8IZU1 332 aaPredicted RBP18.62■□□□□ 0.57
VPS8-227ENST00000625842 NISCHQ9Y2I1 1504 aa18.23■□□□□ 0.51
VPS8-227ENST00000625842 APLP2Q06481 763 aa17.81■□□□□ 0.44
VPS8-227ENST00000625842 SUPT5HO00267 1087 aaKnown RBP17.76■□□□□ 0.43
VPS8-227ENST00000625842 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.36
VPS8-227ENST00000625842 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
VPS8-227ENST00000625842 PELP1Q8IZL8 1130 aaKnown RBP17.1■□□□□ 0.33
VPS8-227ENST00000625842 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
VPS8-227ENST00000625842 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.32
VPS8-227ENST00000625842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.84■□□□□ 0.29
VPS8-227ENST00000625842 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
VPS8-227ENST00000625842 RANGAP1P46060 587 aaPredicted RBP16.8■□□□□ 0.28
VPS8-227ENST00000625842 UBTFP17480 764 aaKnown RBP16.76■□□□□ 0.27
VPS8-227ENST00000625842 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
VPS8-227ENST00000625842 TTBK1Q5TCY1 1321 aaPredicted RBP16.59■□□□□ 0.25
VPS8-227ENST00000625842 CCER1Q8TC90 406 aaPredicted RBP16.4■□□□□ 0.22
VPS8-227ENST00000625842 ABCC9O60706 1549 aa16.35■□□□□ 0.21
VPS8-227ENST00000625842 ESF1Q9H501 851 aaKnown RBP16.34■□□□□ 0.21
VPS8-227ENST00000625842 CHIC1Q5VXU3 224 aa16.32■□□□□ 0.2
VPS8-227ENST00000625842 NPM1P06748 294 aaKnown RBP eCLIP16.31■□□□□ 0.2
VPS8-227ENST00000625842 FBLN2P98095 1184 aa16.31■□□□□ 0.2
VPS8-227ENST00000625842 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS8-227ENST00000625842 SLC4A1APQ9BWU0 796 aaKnown RBP16.19■□□□□ 0.18
VPS8-227ENST00000625842 PCGF6Q9BYE7 350 aa16.16■□□□□ 0.18
VPS8-227ENST00000625842 ZEB1P37275 1124 aaPredicted RBP16.16■□□□□ 0.18
VPS8-227ENST00000625842 BCANQ96GW7 911 aa16.13■□□□□ 0.17
VPS8-227ENST00000625842 NEFLP07196 543 aa16.08■□□□□ 0.16
VPS8-227ENST00000625842 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
VPS8-227ENST00000625842 POLR3GLQ9BT43 218 aa16.02■□□□□ 0.15
VPS8-227ENST00000625842 CDK11AQ9UQ88 783 aaPredicted RBP16■□□□□ 0.15
VPS8-227ENST00000625842 ITGAEP38570 1179 aa15.96■□□□□ 0.15
VPS8-227ENST00000625842 CENPBP07199 599 aaPredicted RBP15.95■□□□□ 0.14
VPS8-227ENST00000625842 NEFMP07197 916 aa15.9■□□□□ 0.14
VPS8-227ENST00000625842 STAG3Q9UJ98 1225 aa15.89■□□□□ 0.14
VPS8-227ENST00000625842 TRIM52Q96A61 297 aa15.83■□□□□ 0.12
VPS8-227ENST00000625842 DAXXQ9UER7 740 aaPredicted RBP15.82■□□□□ 0.12
VPS8-227ENST00000625842 ZBTB47Q9UFB7 747 aaPredicted RBP15.77■□□□□ 0.12
VPS8-227ENST00000625842 FAM50AQ14320 339 aaKnown RBP15.75■□□□□ 0.11
VPS8-227ENST00000625842 SLC24A1O60721 1099 aa15.71■□□□□ 0.11
VPS8-227ENST00000625842 PLPPR3Q6T4P5 718 aa15.67■□□□□ 0.1
VPS8-227ENST00000625842 CHMP7Q8WUX9 453 aaPredicted RBP15.64■□□□□ 0.09
VPS8-227ENST00000625842 NPM2Q86SE8 214 aaKnown RBP15.59■□□□□ 0.09
VPS8-227ENST00000625842 ZNF777Q9ULD5 760 aaPredicted RBP15.57■□□□□ 0.08
VPS8-227ENST00000625842 CHGAP10645 457 aaKnown RBP15.54■□□□□ 0.08
VPS8-227ENST00000625842 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
VPS8-227ENST00000625842 CLSPNQ9HAW4 1339 aa15.54■□□□□ 0.08
VPS8-227ENST00000625842 ARID4BQ4LE39 1312 aaPredicted RBP15.49■□□□□ 0.07
VPS8-227ENST00000625842 CNGB1Q14028 1251 aaPredicted RBP15.48■□□□□ 0.07
VPS8-227ENST00000625842 ZNF326Q5BKZ1 582 aaKnown RBP15.48■□□□□ 0.07
VPS8-227ENST00000625842 C14orf37Q86TY3 774 aa15.48■□□□□ 0.07
VPS8-227ENST00000625842 HAP1P54257 671 aaPredicted RBP15.46■□□□□ 0.06
VPS8-227ENST00000625842 SCAF1Q9H7N4 1312 aaKnown RBP15.44■□□□□ 0.06
VPS8-227ENST00000625842 PPARGC1BQ86YN6 1023 aaKnown RBP15.43■□□□□ 0.06
VPS8-227ENST00000625842 TSPY4P0CV99 314 aa15.43■□□□□ 0.06
VPS8-227ENST00000625842 TSPY10P0CW01 314 aa15.43■□□□□ 0.06
VPS8-227ENST00000625842 ARID3CA6NKF2 412 aa15.41■□□□□ 0.06
VPS8-227ENST00000625842 PPP1R15AO75807 674 aaPredicted RBP15.41■□□□□ 0.06
VPS8-227ENST00000625842 TRIM26Q12899 539 aaPredicted RBP15.41■□□□□ 0.06
VPS8-227ENST00000625842 ERCC6Q03468 1493 aa15.4■□□□□ 0.06
VPS8-227ENST00000625842 P3H3Q8IVL6 736 aa15.36■□□□□ 0.05
VPS8-227ENST00000625842 A0A0G2JS52 829 aa15.36■□□□□ 0.05
VPS8-227ENST00000625842 SCRIBQ14160 1630 aa15.33■□□□□ 0.04
VPS8-227ENST00000625842 AEBP2Q6ZN18 517 aaPredicted RBP15.32■□□□□ 0.04
VPS8-227ENST00000625842 CANXP27824 592 aaKnown RBP15.32■□□□□ 0.04
VPS8-227ENST00000625842 ACIN1Q9UKV3 1341 aaKnown RBP15.3■□□□□ 0.04
VPS8-227ENST00000625842 RB1CC1Q8TDY2 1594 aa15.3■□□□□ 0.04
VPS8-227ENST00000625842 YTHDC1Q96MU7 727 aaKnown RBP15.29■□□□□ 0.04
VPS8-227ENST00000625842 PLEKHD1A6NEE1 506 aa15.28■□□□□ 0.04
VPS8-227ENST00000625842 CSRNP3Q8WYN3 585 aa15.28■□□□□ 0.04
VPS8-227ENST00000625842 ZNF316A6NFI3 1004 aaPredicted RBP15.27■□□□□ 0.04
VPS8-227ENST00000625842 HDGFP51858 240 aaKnown RBP15.27■□□□□ 0.04
VPS8-227ENST00000625842 NEUROD1Q13562 356 aa15.25■□□□□ 0.03
VPS8-227ENST00000625842 KCNH8Q96L42 1107 aa15.19■□□□□ 0.02
VPS8-227ENST00000625842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.18■□□□□ 0.02
VPS8-227ENST00000625842 MYT1Q01538 1121 aa15.14■□□□□ 0.01
VPS8-227ENST00000625842 ANP32CO43423 234 aa15.13■□□□□ 0.01
VPS8-227ENST00000625842 ZBTB7CA1YPR0 619 aa15.07■□□□□ 0
VPS8-227ENST00000625842 NPHP1O15259 732 aa15.07■□□□□ 0
VPS8-227ENST00000625842 MTUS2Q5JR59 1369 aa15.05■□□□□ 0
VPS8-227ENST00000625842 EIF4G2P78344 907 aaKnown RBP eCLIP15.02■□□□□ -0
VPS8-227ENST00000625842 LOC105371045A0A1W2PR82 267 aa15.01□□□□□ -0.01
VPS8-227ENST00000625842 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
VPS8-227ENST00000625842 DCAF8L1A6NGE4 600 aa15□□□□□ -0.01
VPS8-227ENST00000625842 LMOD2Q6P5Q4 547 aa14.98□□□□□ -0.01
VPS8-227ENST00000625842 BCL11AQ9H165 835 aa14.98□□□□□ -0.01
VPS8-227ENST00000625842 NACADO15069 1562 aa14.97□□□□□ -0.01
VPS8-227ENST00000625842 CDCA8Q53HL2 280 aa14.96□□□□□ -0.01
VPS8-227ENST00000625842 FOXD1Q16676 465 aa14.95□□□□□ -0.02
VPS8-227ENST00000625842 CDK11BP21127 795 aaKnown RBP14.95□□□□□ -0.02
VPS8-227ENST00000625842 TONSLQ96HA7 1378 aa14.95□□□□□ -0.02
VPS8-227ENST00000625842 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
VPS8-227ENST00000625842 RTL5Q5HYW3 569 aaPredicted RBP14.91□□□□□ -0.02
VPS8-227ENST00000625842 ARXQ96QS3 562 aa14.91□□□□□ -0.02
VPS8-227ENST00000625842 KANK1Q14678 1352 aa14.91□□□□□ -0.02
VPS8-227ENST00000625842 PLEKHG5O94827 1062 aa14.9□□□□□ -0.02
VPS8-227ENST00000625842 TMX4Q9H1E5 349 aaPredicted RBP14.9□□□□□ -0.02
VPS8-227ENST00000625842 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
VPS8-227ENST00000625842 CFDP1Q9UEE9 299 aaPredicted RBP14.9□□□□□ -0.02
VPS8-227ENST00000625842 POGKQ9P215 609 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms