RNA–Protein interactions for RNA: ENST00000372242.7

TMEM53-203, Transcript of transmembrane protein 53, humanhuman

TSL 3 BASIC

Gene TMEM53, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-203ENST00000372242 NISCHQ9Y2I1 1504 aa38.9■■■■□ 3.82
TMEM53-203ENST00000372242 CCDC180Q9P1Z9 1646 aa34.34■■■■□ 3.09
TMEM53-203ENST00000372242 ABCC9O60706 1549 aa33.33■■■□□ 2.93
TMEM53-203ENST00000372242 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
TMEM53-203ENST00000372242 DCAF8L2P0C7V8 631 aa32.46■■■□□ 2.79
TMEM53-203ENST00000372242 NACADO15069 1562 aa32.2■■■□□ 2.74
TMEM53-203ENST00000372242 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
TMEM53-203ENST00000372242 DCAF1Q9Y4B6 1507 aa32.13■■■□□ 2.73
TMEM53-203ENST00000372242 MYO15BQ96JP2 1530 aa32.1■■■□□ 2.73
TMEM53-203ENST00000372242 UNC13AQ9UPW8 1703 aa31.48■■■□□ 2.63
TMEM53-203ENST00000372242 SCRIBQ14160 1630 aa31.47■■■□□ 2.63
TMEM53-203ENST00000372242 PABPN1Q86U42 306 aaKnown RBP eCLIP31.25■■■□□ 2.59
TMEM53-203ENST00000372242 BICRAQ9NZM4 1560 aa31.21■■■□□ 2.59
TMEM53-203ENST00000372242 SHROOM4Q9ULL8 1493 aa31.11■■■□□ 2.57
TMEM53-203ENST00000372242 EIF4G1Q04637 1599 aaKnown RBP30.34■■■□□ 2.45
TMEM53-203ENST00000372242 CECR2Q9BXF3 1484 aa30.31■■■□□ 2.44
TMEM53-203ENST00000372242 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
TMEM53-203ENST00000372242 CC2D2AQ9P2K1 1620 aa30.13■■■□□ 2.41
TMEM53-203ENST00000372242 BAZ1AQ9NRL2 1556 aaPredicted RBP30.1■■■□□ 2.41
TMEM53-203ENST00000372242 SMARCA4P51532 1647 aa30.09■■■□□ 2.41
TMEM53-203ENST00000372242 MROH2BQ7Z745 1585 aa30.03■■■□□ 2.4
TMEM53-203ENST00000372242 ATAD2BQ9ULI0 1458 aa29.83■■■□□ 2.37
TMEM53-203ENST00000372242 RSF1Q96T23 1441 aaPredicted RBP29.82■■■□□ 2.36
TMEM53-203ENST00000372242 SMARCA2P51531 1590 aa29.78■■■□□ 2.36
TMEM53-203ENST00000372242 PEG3Q9GZU2 1588 aa29.75■■■□□ 2.35
TMEM53-203ENST00000372242 WIZO95785 1651 aa29.73■■■□□ 2.35
TMEM53-203ENST00000372242 NCAPD3P42695 1498 aa29.72■■■□□ 2.35
TMEM53-203ENST00000372242 BAZ1BQ9UIG0 1483 aaKnown RBP29.62■■■□□ 2.33
TMEM53-203ENST00000372242 HMGXB3Q12766 1538 aa29.6■■■□□ 2.33
TMEM53-203ENST00000372242 SUPT5HO00267 1087 aaKnown RBP29.46■■■□□ 2.31
TMEM53-203ENST00000372242 TOP2AP11388 1531 aaKnown RBP29.38■■■□□ 2.29
TMEM53-203ENST00000372242 CCDC88BA6NC98 1476 aa29.07■■■□□ 2.24
TMEM53-203ENST00000372242 NESP48681 1621 aa28.98■■■□□ 2.23
TMEM53-203ENST00000372242 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
TMEM53-203ENST00000372242 LAMC3Q9Y6N6 1575 aa28.87■■■□□ 2.21
TMEM53-203ENST00000372242 CFTRP13569 1480 aa28.81■■■□□ 2.2
TMEM53-203ENST00000372242 PDS5BQ9NTI5 1447 aa28.67■■■□□ 2.18
TMEM53-203ENST00000372242 ERCC6Q03468 1493 aa28.66■■■□□ 2.18
TMEM53-203ENST00000372242 KIF21AQ7Z4S6 1674 aa28.62■■■□□ 2.17
TMEM53-203ENST00000372242 PRDM2Q13029 1718 aa28.6■■■□□ 2.17
TMEM53-203ENST00000372242 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
TMEM53-203ENST00000372242 CEP164Q9UPV0 1460 aa28.5■■■□□ 2.15
TMEM53-203ENST00000372242 THOC2Q8NI27 1593 aaKnown RBP28.39■■■□□ 2.13
TMEM53-203ENST00000372242 MRC2Q9UBG0 1479 aa28.36■■■□□ 2.13
TMEM53-203ENST00000372242 URB2Q14146 1524 aaKnown RBP28.29■■■□□ 2.12
TMEM53-203ENST00000372242 WDR62O43379 1518 aa28.25■■■□□ 2.11
TMEM53-203ENST00000372242 ABCC8Q09428 1581 aa28.18■■■□□ 2.1
TMEM53-203ENST00000372242 TOPBP1Q92547 1522 aa28.18■■■□□ 2.1
TMEM53-203ENST00000372242 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
TMEM53-203ENST00000372242 CUX2O14529 1486 aa28.14■■■□□ 2.1
TMEM53-203ENST00000372242 CUX1P39880 1505 aa28.13■■■□□ 2.09
TMEM53-203ENST00000372242 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
TMEM53-203ENST00000372242 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
TMEM53-203ENST00000372242 TOP2BQ02880 1626 aa27.97■■■□□ 2.07
TMEM53-203ENST00000372242 POLA1P09884 1462 aaPredicted RBP27.97■■■□□ 2.07
TMEM53-203ENST00000372242 FGD5Q6ZNL6 1462 aa27.97■■■□□ 2.07
TMEM53-203ENST00000372242 BIVM-ERCC5R4GMW8 1640 aa27.96■■■□□ 2.07
TMEM53-203ENST00000372242 RAD54L2Q9Y4B4 1467 aa27.88■■■□□ 2.05
TMEM53-203ENST00000372242 SOGA1O94964 1423 aa27.86■■■□□ 2.05
TMEM53-203ENST00000372242 IFT140Q96RY7 1462 aa27.86■■■□□ 2.05
TMEM53-203ENST00000372242 TARBP1Q13395 1621 aaKnown RBP27.83■■■□□ 2.05
TMEM53-203ENST00000372242 ZNF608Q9ULD9 1512 aaPredicted RBP27.77■■■□□ 2.04
TMEM53-203ENST00000372242 TRIM41Q8WV44 630 aa27.76■■■□□ 2.03
TMEM53-203ENST00000372242 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
TMEM53-203ENST00000372242 CHIC1Q5VXU3 224 aa27.69■■■□□ 2.02
TMEM53-203ENST00000372242 WDR97A6NE52 1622 aa27.69■■■□□ 2.02
TMEM53-203ENST00000372242 ABCA10Q8WWZ4 1543 aa27.68■■■□□ 2.02
TMEM53-203ENST00000372242 AQRO60306 1485 aaKnown RBP eCLIP27.67■■■□□ 2.02
TMEM53-203ENST00000372242 EIF4G3O43432 1585 aaKnown RBP27.65■■■□□ 2.02
TMEM53-203ENST00000372242 GAPVD1Q14C86 1478 aa27.54■■■□□ 2
TMEM53-203ENST00000372242 ABCA5Q8WWZ7 1642 aa27.54■■■□□ 2
TMEM53-203ENST00000372242 GRIN2BQ13224 1484 aa27.46■■□□□ 1.99
TMEM53-203ENST00000372242 PBRM1Q86U86 1689 aa27.46■■□□□ 1.99
TMEM53-203ENST00000372242 KIF27Q86VH2 1401 aa27.45■■□□□ 1.99
TMEM53-203ENST00000372242 RUSC2Q8N2Y8 1516 aa27.42■■□□□ 1.98
TMEM53-203ENST00000372242 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
TMEM53-203ENST00000372242 ERICH3Q5RHP9 1530 aa27.35■■□□□ 1.97
TMEM53-203ENST00000372242 MAGI1Q96QZ7 1491 aaPredicted RBP27.33■■□□□ 1.97
TMEM53-203ENST00000372242 IGF1RP08069 1367 aa27.32■■□□□ 1.96
TMEM53-203ENST00000372242 FBLN2P98095 1184 aa27.3■■□□□ 1.96
TMEM53-203ENST00000372242 ADAMTS12P58397 1594 aa27.25■■□□□ 1.95
TMEM53-203ENST00000372242 FAM9AQ8IZU1 332 aaPredicted RBP27.25■■□□□ 1.95
TMEM53-203ENST00000372242 SYNJ2O15056 1496 aa27.24■■□□□ 1.95
TMEM53-203ENST00000372242 CHD1O14646 1710 aa27.23■■□□□ 1.95
TMEM53-203ENST00000372242 CHMP7Q8WUX9 453 aaPredicted RBP27.23■■□□□ 1.95
TMEM53-203ENST00000372242 FHAD1B1AJZ9 1412 aa27.22■■□□□ 1.95
TMEM53-203ENST00000372242 CUL7Q14999 1698 aa27.17■■□□□ 1.94
TMEM53-203ENST00000372242 CARMIL1Q5VZK9 1371 aa27.16■■□□□ 1.94
TMEM53-203ENST00000372242 EEA1Q15075 1411 aa27.16■■□□□ 1.94
TMEM53-203ENST00000372242 CSRNP3Q8WYN3 585 aa27.14■■□□□ 1.94
TMEM53-203ENST00000372242 GRIN2AQ12879 1464 aa27.13■■□□□ 1.93
TMEM53-203ENST00000372242 OSCARQ8IYS5 282 aa27.12■■□□□ 1.93
TMEM53-203ENST00000372242 PRXQ9BXM0 1461 aa27.04■■□□□ 1.92
TMEM53-203ENST00000372242 RAPGEF2Q9Y4G8 1499 aa27.03■■□□□ 1.92
TMEM53-203ENST00000372242 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
TMEM53-203ENST00000372242 NUP160Q12769 1436 aa26.97■■□□□ 1.91
TMEM53-203ENST00000372242 EHMT2Q96KQ7 1210 aa26.92■■□□□ 1.9
TMEM53-203ENST00000372242 CLASP1Q7Z460 1538 aa26.91■■□□□ 1.9
TMEM53-203ENST00000372242 KIF21BO75037 1637 aa26.88■■□□□ 1.89
TMEM53-203ENST00000372242 DNAJC5Q9H3Z4 198 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms