Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 ABHD17AP9-201ENST00000561925 548 ntBASIC16.18■□□□□ 0.18
LRCH3Q96II8 AC093752.3-201ENST00000567343 901 ntBASIC16.18■□□□□ 0.18
LRCH3Q96II8 PHBP15-201ENST00000574228 665 ntBASIC16.18■□□□□ 0.18
LRCH3Q96II8 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 AC103702.1-201ENST00000548801 2630 ntBASIC16.18■□□□□ 0.18
LRCH3Q96II8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LRCH3Q96II8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LRCH3Q96II8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 SHC1P1-201ENST00000425230 1745 ntBASIC16.17■□□□□ 0.18
LRCH3Q96II8 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 MIR557-201ENST00000385239 98 ntBASIC16.17■□□□□ 0.18
LRCH3Q96II8 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 KATNBL1P2-201ENST00000433311 835 ntBASIC16.17■□□□□ 0.18
LRCH3Q96II8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 AP005212.2-201ENST00000584979 510 ntBASIC16.17■□□□□ 0.18
LRCH3Q96II8 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.17■□□□□ 0.18
LRCH3Q96II8 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LRCH3Q96II8 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AC015909.3-201ENST00000572855 1794 ntBASIC16.16■□□□□ 0.18
LRCH3Q96II8 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AL807761.2-201ENST00000422849 729 ntBASIC16.16■□□□□ 0.18
LRCH3Q96II8 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LRCH3Q96II8 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC16.16■□□□□ 0.18
LRCH3Q96II8 PMEL-214ENST00000550447 901 ntTSL 3 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms