RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 NISCHQ9Y2I1 1504 aa33.05■■■□□ 2.88
VCX3A-202ENST00000398729 ABCC9O60706 1549 aa30.05■■■□□ 2.4
VCX3A-202ENST00000398729 CCDC180Q9P1Z9 1646 aa29.55■■■□□ 2.32
VCX3A-202ENST00000398729 DNAJC5BQ9UF47 199 aa28.7■■■□□ 2.18
VCX3A-202ENST00000398729 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
VCX3A-202ENST00000398729 NACADO15069 1562 aa28.1■■■□□ 2.09
VCX3A-202ENST00000398729 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
VCX3A-202ENST00000398729 PABPN1Q86U42 306 aaKnown RBP eCLIP28.03■■■□□ 2.08
VCX3A-202ENST00000398729 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
VCX3A-202ENST00000398729 BICRAQ9NZM4 1560 aa27.64■■■□□ 2.01
VCX3A-202ENST00000398729 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
VCX3A-202ENST00000398729 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
VCX3A-202ENST00000398729 DCAF1Q9Y4B6 1507 aa27.33■■□□□ 1.97
VCX3A-202ENST00000398729 CECR2Q9BXF3 1484 aa27.1■■□□□ 1.93
VCX3A-202ENST00000398729 SHROOM4Q9ULL8 1493 aa27.1■■□□□ 1.93
VCX3A-202ENST00000398729 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
VCX3A-202ENST00000398729 SCRIBQ14160 1630 aa26.97■■□□□ 1.91
VCX3A-202ENST00000398729 EIF4G1Q04637 1599 aaKnown RBP26.93■■□□□ 1.9
VCX3A-202ENST00000398729 DNAJC5Q9H3Z4 198 aa26.54■■□□□ 1.84
VCX3A-202ENST00000398729 NCAPD3P42695 1498 aa26.04■■□□□ 1.76
VCX3A-202ENST00000398729 CUX2O14529 1486 aa25.98■■□□□ 1.75
VCX3A-202ENST00000398729 ERCC6Q03468 1493 aa25.9■■□□□ 1.74
VCX3A-202ENST00000398729 ATAD2BQ9ULI0 1458 aa25.89■■□□□ 1.73
VCX3A-202ENST00000398729 NESP48681 1621 aa25.75■■□□□ 1.71
VCX3A-202ENST00000398729 SMARCA4P51532 1647 aa25.73■■□□□ 1.71
VCX3A-202ENST00000398729 SMARCA2P51531 1590 aa25.7■■□□□ 1.71
VCX3A-202ENST00000398729 HMGXB3Q12766 1538 aa25.7■■□□□ 1.7
VCX3A-202ENST00000398729 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
VCX3A-202ENST00000398729 BAZ1BQ9UIG0 1483 aaKnown RBP25.55■■□□□ 1.68
VCX3A-202ENST00000398729 PEG3Q9GZU2 1588 aa25.47■■□□□ 1.67
VCX3A-202ENST00000398729 MROH2BQ7Z745 1585 aa25.46■■□□□ 1.67
VCX3A-202ENST00000398729 THOC2Q8NI27 1593 aaKnown RBP25.44■■□□□ 1.66
VCX3A-202ENST00000398729 LAMC3Q9Y6N6 1575 aa25.39■■□□□ 1.66
VCX3A-202ENST00000398729 PDS5BQ9NTI5 1447 aa25.31■■□□□ 1.64
VCX3A-202ENST00000398729 KIF21AQ7Z4S6 1674 aa25.29■■□□□ 1.64
VCX3A-202ENST00000398729 CADPSQ9ULU8 1353 aa25.23■■□□□ 1.63
VCX3A-202ENST00000398729 WIZO95785 1651 aa25.17■■□□□ 1.62
VCX3A-202ENST00000398729 TRIM41Q8WV44 630 aa25.17■■□□□ 1.62
VCX3A-202ENST00000398729 MRC2Q9UBG0 1479 aa25.09■■□□□ 1.61
VCX3A-202ENST00000398729 RSF1Q96T23 1441 aaPredicted RBP25.05■■□□□ 1.6
VCX3A-202ENST00000398729 WDR62O43379 1518 aa25.03■■□□□ 1.6
VCX3A-202ENST00000398729 CEP164Q9UPV0 1460 aa24.9■■□□□ 1.58
VCX3A-202ENST00000398729 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.58
VCX3A-202ENST00000398729 TOP2AP11388 1531 aaKnown RBP24.89■■□□□ 1.57
VCX3A-202ENST00000398729 OSCARQ8IYS5 282 aa24.86■■□□□ 1.57
VCX3A-202ENST00000398729 CFTRP13569 1480 aa24.85■■□□□ 1.57
VCX3A-202ENST00000398729 URB2Q14146 1524 aaKnown RBP24.74■■□□□ 1.55
VCX3A-202ENST00000398729 CCDC88BA6NC98 1476 aa24.6■■□□□ 1.53
VCX3A-202ENST00000398729 PRDM2Q13029 1718 aa24.52■■□□□ 1.52
VCX3A-202ENST00000398729 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
VCX3A-202ENST00000398729 RIMBP3CA6NJZ7 1639 aa24.46■■□□□ 1.51
VCX3A-202ENST00000398729 RIMBP3BA6NNM3 1639 aa24.46■■□□□ 1.51
VCX3A-202ENST00000398729 RIMBP3Q9UFD9 1639 aa24.46■■□□□ 1.51
VCX3A-202ENST00000398729 IFT140Q96RY7 1462 aa24.45■■□□□ 1.5
VCX3A-202ENST00000398729 TOPBP1Q92547 1522 aa24.39■■□□□ 1.49
VCX3A-202ENST00000398729 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
VCX3A-202ENST00000398729 CYB5RLQ6IPT4 315 aa24.32■■□□□ 1.48
VCX3A-202ENST00000398729 AQRO60306 1485 aaKnown RBP eCLIP24.27■■□□□ 1.48
VCX3A-202ENST00000398729 ABCC8Q09428 1581 aa24.27■■□□□ 1.48
VCX3A-202ENST00000398729 EIF4G3O43432 1585 aaKnown RBP24.24■■□□□ 1.47
VCX3A-202ENST00000398729 DNMBPQ6XZF7 1577 aa24.21■■□□□ 1.47
VCX3A-202ENST00000398729 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
VCX3A-202ENST00000398729 TARBP1Q13395 1621 aaKnown RBP24.19■■□□□ 1.46
VCX3A-202ENST00000398729 FBLN2P98095 1184 aa24.17■■□□□ 1.46
VCX3A-202ENST00000398729 POLA1P09884 1462 aaPredicted RBP24.13■■□□□ 1.45
VCX3A-202ENST00000398729 ARAP1Q96P48 1450 aa24.13■■□□□ 1.45
VCX3A-202ENST00000398729 CHD1O14646 1710 aa24.13■■□□□ 1.45
VCX3A-202ENST00000398729 TRHP20396 242 aaPredicted RBP24.11■■□□□ 1.45
VCX3A-202ENST00000398729 RAD54L2Q9Y4B4 1467 aa24.09■■□□□ 1.45
VCX3A-202ENST00000398729 TDRD9Q8NDG6 1382 aaKnown RBP24.08■■□□□ 1.45
VCX3A-202ENST00000398729 SOGA1O94964 1423 aa24.04■■□□□ 1.44
VCX3A-202ENST00000398729 CHMP7Q8WUX9 453 aaPredicted RBP23.93■■□□□ 1.42
VCX3A-202ENST00000398729 SNAPC4Q5SXM2 1469 aa23.92■■□□□ 1.42
VCX3A-202ENST00000398729 CUX1P39880 1505 aa23.91■■□□□ 1.42
VCX3A-202ENST00000398729 FGD5Q6ZNL6 1462 aa23.91■■□□□ 1.42
VCX3A-202ENST00000398729 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.41
VCX3A-202ENST00000398729 MAGI1Q96QZ7 1491 aaPredicted RBP23.82■■□□□ 1.4
VCX3A-202ENST00000398729 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
VCX3A-202ENST00000398729 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
VCX3A-202ENST00000398729 SYNJ1O43426 1573 aa23.78■■□□□ 1.4
VCX3A-202ENST00000398729 SYNJ2O15056 1496 aa23.78■■□□□ 1.4
VCX3A-202ENST00000398729 GAPVD1Q14C86 1478 aa23.7■■□□□ 1.38
VCX3A-202ENST00000398729 WRNQ14191 1432 aaPredicted RBP eCLIP23.65■■□□□ 1.38
VCX3A-202ENST00000398729 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.38
VCX3A-202ENST00000398729 BIVM-ERCC5R4GMW8 1640 aa23.62■■□□□ 1.37
VCX3A-202ENST00000398729 AEBP2Q6ZN18 517 aaPredicted RBP23.62■■□□□ 1.37
VCX3A-202ENST00000398729 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
VCX3A-202ENST00000398729 PBRM1Q86U86 1689 aa23.6■■□□□ 1.37
VCX3A-202ENST00000398729 ABCA5Q8WWZ7 1642 aa23.57■■□□□ 1.36
VCX3A-202ENST00000398729 ERCC6L2Q5T890 1561 aa23.56■■□□□ 1.36
VCX3A-202ENST00000398729 GRIN2AQ12879 1464 aa23.51■■□□□ 1.35
VCX3A-202ENST00000398729 NUP160Q12769 1436 aa23.47■■□□□ 1.35
VCX3A-202ENST00000398729 CEP170Q5SW79 1584 aa23.44■■□□□ 1.34
VCX3A-202ENST00000398729 ADAMTS12P58397 1594 aa23.4■■□□□ 1.34
VCX3A-202ENST00000398729 FHAD1B1AJZ9 1412 aa23.39■■□□□ 1.33
VCX3A-202ENST00000398729 ERICH3Q5RHP9 1530 aa23.36■■□□□ 1.33
VCX3A-202ENST00000398729 SHROOM2Q13796 1616 aa23.36■■□□□ 1.33
VCX3A-202ENST00000398729 JPH4Q96JJ6 628 aa23.32■■□□□ 1.32
VCX3A-202ENST00000398729 PRG4Q92954 1404 aaPredicted RBP23.3■■□□□ 1.32
VCX3A-202ENST00000398729 KIF13AQ9H1H9 1805 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms