RNA–Protein interactions for RNA: ENST00000396682.6

RPA3-202, Transcript of replication protein A3, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RPA3, Length 847 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-202ENST00000396682 NISCHQ9Y2I1 1504 aa33.57■■■□□ 2.96
RPA3-202ENST00000396682 ABCC9O60706 1549 aa30.2■■■□□ 2.42
RPA3-202ENST00000396682 CCDC180Q9P1Z9 1646 aa30.14■■■□□ 2.41
RPA3-202ENST00000396682 RB1CC1Q8TDY2 1594 aa28.7■■■□□ 2.18
RPA3-202ENST00000396682 NACADO15069 1562 aa28.5■■■□□ 2.15
RPA3-202ENST00000396682 DNAJC5BQ9UF47 199 aa28.42■■■□□ 2.14
RPA3-202ENST00000396682 DCAF8L2P0C7V8 631 aa28.28■■■□□ 2.12
RPA3-202ENST00000396682 UNC13AQ9UPW8 1703 aa28.11■■■□□ 2.09
RPA3-202ENST00000396682 MYO15BQ96JP2 1530 aa28.1■■■□□ 2.09
RPA3-202ENST00000396682 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
RPA3-202ENST00000396682 BICRAQ9NZM4 1560 aa27.94■■■□□ 2.06
RPA3-202ENST00000396682 ZCCHC6Q5VYS8 1495 aaKnown RBP27.82■■■□□ 2.04
RPA3-202ENST00000396682 DCAF1Q9Y4B6 1507 aa27.72■■■□□ 2.03
RPA3-202ENST00000396682 SHROOM4Q9ULL8 1493 aa27.49■■□□□ 1.99
RPA3-202ENST00000396682 SCRIBQ14160 1630 aa27.47■■□□□ 1.99
RPA3-202ENST00000396682 CC2D2AQ9P2K1 1620 aa27.29■■□□□ 1.96
RPA3-202ENST00000396682 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
RPA3-202ENST00000396682 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.95
RPA3-202ENST00000396682 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
RPA3-202ENST00000396682 ATAD2BQ9ULI0 1458 aa26.24■■□□□ 1.79
RPA3-202ENST00000396682 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
RPA3-202ENST00000396682 SMARCA2P51531 1590 aa26.14■■□□□ 1.78
RPA3-202ENST00000396682 HMGXB3Q12766 1538 aa26.12■■□□□ 1.77
RPA3-202ENST00000396682 DNAJC5Q9H3Z4 198 aa26.09■■□□□ 1.77
RPA3-202ENST00000396682 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
RPA3-202ENST00000396682 CUX2O14529 1486 aa26.04■■□□□ 1.76
RPA3-202ENST00000396682 BAZ1AQ9NRL2 1556 aaPredicted RBP26.03■■□□□ 1.76
RPA3-202ENST00000396682 PEG3Q9GZU2 1588 aa25.96■■□□□ 1.75
RPA3-202ENST00000396682 BAZ1BQ9UIG0 1483 aaKnown RBP25.96■■□□□ 1.75
RPA3-202ENST00000396682 NESP48681 1621 aa25.96■■□□□ 1.75
RPA3-202ENST00000396682 MROH2BQ7Z745 1585 aa25.88■■□□□ 1.73
RPA3-202ENST00000396682 LAMC3Q9Y6N6 1575 aa25.73■■□□□ 1.71
RPA3-202ENST00000396682 THOC2Q8NI27 1593 aaKnown RBP25.71■■□□□ 1.71
RPA3-202ENST00000396682 KIF21AQ7Z4S6 1674 aa25.61■■□□□ 1.69
RPA3-202ENST00000396682 WIZO95785 1651 aa25.56■■□□□ 1.68
RPA3-202ENST00000396682 PDS5BQ9NTI5 1447 aa25.55■■□□□ 1.68
RPA3-202ENST00000396682 CADPSQ9ULU8 1353 aa25.5■■□□□ 1.67
RPA3-202ENST00000396682 MRC2Q9UBG0 1479 aa25.36■■□□□ 1.65
RPA3-202ENST00000396682 WDR62O43379 1518 aa25.33■■□□□ 1.65
RPA3-202ENST00000396682 RSF1Q96T23 1441 aaPredicted RBP25.31■■□□□ 1.64
RPA3-202ENST00000396682 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
RPA3-202ENST00000396682 TOP2AP11388 1531 aaKnown RBP25.22■■□□□ 1.63
RPA3-202ENST00000396682 CFTRP13569 1480 aa25.22■■□□□ 1.63
RPA3-202ENST00000396682 FANCD2Q9BXW9 1451 aa25.22■■□□□ 1.63
RPA3-202ENST00000396682 URB2Q14146 1524 aaKnown RBP25.05■■□□□ 1.6
RPA3-202ENST00000396682 PRDM2Q13029 1718 aa24.96■■□□□ 1.59
RPA3-202ENST00000396682 CCDC88BA6NC98 1476 aa24.95■■□□□ 1.58
RPA3-202ENST00000396682 TRIM41Q8WV44 630 aa24.89■■□□□ 1.58
RPA3-202ENST00000396682 OSCARQ8IYS5 282 aa24.8■■□□□ 1.56
RPA3-202ENST00000396682 ZNF608Q9ULD9 1512 aaPredicted RBP24.76■■□□□ 1.55
RPA3-202ENST00000396682 TOPBP1Q92547 1522 aa24.75■■□□□ 1.55
RPA3-202ENST00000396682 IFT140Q96RY7 1462 aa24.74■■□□□ 1.55
RPA3-202ENST00000396682 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
RPA3-202ENST00000396682 ABCC8Q09428 1581 aa24.64■■□□□ 1.54
RPA3-202ENST00000396682 EIF4G3O43432 1585 aaKnown RBP24.6■■□□□ 1.53
RPA3-202ENST00000396682 TARBP1Q13395 1621 aaKnown RBP24.56■■□□□ 1.52
RPA3-202ENST00000396682 RIMBP3CA6NJZ7 1639 aa24.54■■□□□ 1.52
RPA3-202ENST00000396682 RIMBP3BA6NNM3 1639 aa24.54■■□□□ 1.52
RPA3-202ENST00000396682 RIMBP3Q9UFD9 1639 aa24.54■■□□□ 1.52
RPA3-202ENST00000396682 AQRO60306 1485 aaKnown RBP eCLIP24.5■■□□□ 1.517e-7■■□□□ 14.1
RPA3-202ENST00000396682 POLA1P09884 1462 aaPredicted RBP24.5■■□□□ 1.51
RPA3-202ENST00000396682 ARHGEF11O15085 1522 aa24.46■■□□□ 1.51
RPA3-202ENST00000396682 CHD1O14646 1710 aa24.42■■□□□ 1.5
RPA3-202ENST00000396682 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
RPA3-202ENST00000396682 SOGA1O94964 1423 aa24.35■■□□□ 1.49
RPA3-202ENST00000396682 FGD5Q6ZNL6 1462 aa24.33■■□□□ 1.49
RPA3-202ENST00000396682 TDRD9Q8NDG6 1382 aaKnown RBP24.33■■□□□ 1.49
RPA3-202ENST00000396682 CUX1P39880 1505 aa24.32■■□□□ 1.48
RPA3-202ENST00000396682 FBLN2P98095 1184 aa24.29■■□□□ 1.48
RPA3-202ENST00000396682 WDR97A6NE52 1622 aa24.26■■□□□ 1.47
RPA3-202ENST00000396682 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
RPA3-202ENST00000396682 CYB5RLQ6IPT4 315 aa24.24■■□□□ 1.47
RPA3-202ENST00000396682 ARAP1Q96P48 1450 aa24.23■■□□□ 1.47
RPA3-202ENST00000396682 MAGI1Q96QZ7 1491 aaPredicted RBP24.17■■□□□ 1.46
RPA3-202ENST00000396682 CLASP1Q7Z460 1538 aa24.15■■□□□ 1.46
RPA3-202ENST00000396682 GRIN2BQ13224 1484 aa24.15■■□□□ 1.46
RPA3-202ENST00000396682 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
RPA3-202ENST00000396682 SYNJ1O43426 1573 aa24.09■■□□□ 1.45
RPA3-202ENST00000396682 SYNJ2O15056 1496 aa24.09■■□□□ 1.45
RPA3-202ENST00000396682 SUPT5HO00267 1087 aaKnown RBP24.09■■□□□ 1.45
RPA3-202ENST00000396682 PBRM1Q86U86 1689 aa24.08■■□□□ 1.44
RPA3-202ENST00000396682 GAPVD1Q14C86 1478 aa24.07■■□□□ 1.44
RPA3-202ENST00000396682 ABCA10Q8WWZ4 1543 aa24.05■■□□□ 1.44
RPA3-202ENST00000396682 ABCA5Q8WWZ7 1642 aa24.04■■□□□ 1.44
RPA3-202ENST00000396682 TRHP20396 242 aaPredicted RBP23.96■■□□□ 1.43
RPA3-202ENST00000396682 WRNQ14191 1432 aaPredicted RBP eCLIP23.91■■□□□ 1.42
RPA3-202ENST00000396682 BIVM-ERCC5R4GMW8 1640 aa23.91■■□□□ 1.42
RPA3-202ENST00000396682 TOP2BQ02880 1626 aa23.9■■□□□ 1.42
RPA3-202ENST00000396682 GRIN2AQ12879 1464 aa23.86■■□□□ 1.41
RPA3-202ENST00000396682 ADAMTS12P58397 1594 aa23.86■■□□□ 1.41
RPA3-202ENST00000396682 NUP160Q12769 1436 aa23.8■■□□□ 1.4
RPA3-202ENST00000396682 CEP170Q5SW79 1584 aa23.8■■□□□ 1.4
RPA3-202ENST00000396682 ERCC6L2Q5T890 1561 aa23.8■■□□□ 1.4
RPA3-202ENST00000396682 FHAD1B1AJZ9 1412 aa23.76■■□□□ 1.39
RPA3-202ENST00000396682 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
RPA3-202ENST00000396682 SHROOM2Q13796 1616 aa23.71■■□□□ 1.39
RPA3-202ENST00000396682 PRG4Q92954 1404 aaPredicted RBP23.54■■□□□ 1.36
RPA3-202ENST00000396682 RUSC2Q8N2Y8 1516 aa23.53■■□□□ 1.36
RPA3-202ENST00000396682 JPH4Q96JJ6 628 aa23.5■■□□□ 1.35
RPA3-202ENST00000396682 IGF1RP08069 1367 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms