Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.73e-7■□□□□ 9.5
YBX3P16989 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.843e-7■□□□□ 9.5
YBX3P16989 POLR2G-203ENST00000525455 919 ntTSL 318.02■□□□□ 0.483e-8■□□□□ 9.5
YBX3P16989 POLR2G-202ENST00000524819 1053 ntTSL 317.48■□□□□ 0.393e-8■□□□□ 9.5
YBX3P16989 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.373e-8■□□□□ 9.5
YBX3P16989 POLR2G-206ENST00000531944 1556 ntTSL 516.04■□□□□ 0.163e-8■□□□□ 9.5
YBX3P16989 POLR2G-205ENST00000527435 868 ntTSL 213.1□□□□□ -0.313e-8■□□□□ 9.5
YBX3P16989 POLR2G-207ENST00000531996 660 ntTSL 39.55□□□□□ -0.883e-8■□□□□ 9.5
YBX3P16989 POLR2G-208ENST00000533442 388 ntTSL 39.06□□□□□ -0.963e-8■□□□□ 9.5
YBX3P16989 SIN3A-205ENST00000564778 617 ntTSL 212.03□□□□□ -0.485e-6■□□□□ 9.5
YBX3P16989 PXN-203ENST00000323871 5457 ntTSL 218.21■□□□□ 0.512e-6■□□□□ 9.5
YBX3P16989 PXN-208ENST00000538144 1805 ntTSL 1 (best)17.74■□□□□ 0.432e-6■□□□□ 9.5
YBX3P16989 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.192e-6■□□□□ 9.5
YBX3P16989 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.142e-6■□□□□ 9.5
YBX3P16989 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.032e-6■□□□□ 9.5
YBX3P16989 PXN-204ENST00000424649 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.382e-6■□□□□ 9.5
YBX3P16989 PXN-202ENST00000267257 3835 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.682e-6■□□□□ 9.5
YBX3P16989 PXN-206ENST00000458477 3807 ntTSL 1 (best) BASIC10.83□□□□□ -0.682e-6■□□□□ 9.5
YBX3P16989 TMEM248-207ENST00000607045 690 ntTSL 329.95■■■□□ 2.395e-9■□□□□ 9.5
YBX3P16989 TMEM248-204ENST00000424964 536 ntTSL 418.81■□□□□ 0.65e-9■□□□□ 9.5
YBX3P16989 CLPTM1L-213ENST00000512451 341 ntTSL 521.9■■□□□ 1.17e-7■□□□□ 9.5
YBX3P16989 CLPTM1L-215ENST00000515719 382 ntTSL 221.56■■□□□ 1.047e-7■□□□□ 9.5
YBX3P16989 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.673e-7■□□□□ 9.5
YBX3P16989 PIK3CG-202ENST00000440650 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.572e-6■□□□□ 9.5
YBX3P16989 RPL15-212ENST00000490223 1785 ntTSL 222.68■■□□□ 1.223e-15■□□□□ 9.5
YBX3P16989 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.443e-15■□□□□ 9.5
YBX3P16989 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.283e-15■□□□□ 9.5
YBX3P16989 RPL15-211ENST00000465786 1729 ntTSL 1 (best)11.15□□□□□ -0.623e-15■□□□□ 9.5
YBX3P16989 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC33.54■■■□□ 2.963e-11■□□□□ 9.5
YBX3P16989 POLR1D-210ENST00000627604 565 ntTSL 428.17■■■□□ 2.13e-11■□□□□ 9.5
YBX3P16989 POLR1D-206ENST00000489647 1723 ntTSL 1 (best) BASIC12.62□□□□□ -0.393e-11■□□□□ 9.5
YBX3P16989 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.333e-11■□□□□ 9.5
YBX3P16989 POLR1D-222ENST00000637389 129 ntTSL 52.99□□□□□ -1.933e-11■□□□□ 9.5
YBX3P16989 USP22-209ENST00000579645 1906 ntTSL 522.7■■□□□ 1.237e-7■□□□□ 9.5
YBX3P16989 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)15.55■□□□□ 0.082e-8■□□□□ 9.5
YBX3P16989 UBAP2L-214ENST00000475373 838 ntTSL 211.82□□□□□ -0.522e-8■□□□□ 9.5
YBX3P16989 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)11.13□□□□□ -0.632e-8■□□□□ 9.5
YBX3P16989 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.642e-8■□□□□ 9.5
YBX3P16989 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC10.76□□□□□ -0.692e-8■□□□□ 9.5
YBX3P16989 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC10.09□□□□□ -0.792e-8■□□□□ 9.5
YBX3P16989 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC9.16□□□□□ -0.942e-8■□□□□ 9.5
YBX3P16989 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.052e-8■□□□□ 9.5
YBX3P16989 UBAP2L-218ENST00000493867 677 ntTSL 36.09□□□□□ -1.432e-8■□□□□ 9.5
YBX3P16989 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.534e-9■□□□□ 9.5
YBX3P16989 RNASE1-204ENST00000412779 896 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.094e-9■□□□□ 9.5
YBX3P16989 RNASE1-201ENST00000340900 878 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.254e-9■□□□□ 9.5
YBX3P16989 RNASE1-203ENST00000397970 769 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.394e-9■□□□□ 9.5
YBX3P16989 RNASE1-205ENST00000555698 655 ntTSL 3 BASIC12.1□□□□□ -0.474e-9■□□□□ 9.5
YBX3P16989 VBP1-203ENST00000535916 944 ntTSL 2 BASIC9.4□□□□□ -0.91e-6■□□□□ 9.5
YBX3P16989 VBP1-202ENST00000460509 586 ntTSL 26.57□□□□□ -1.361e-6■□□□□ 9.5
YBX3P16989 USP42-205ENST00000465073 1490 ntTSL 531.23■■■□□ 2.596e-9■□□□□ 9.5
YBX3P16989 USP42-207ENST00000521713 5017 ntTSL 516.56■□□□□ 0.246e-9■□□□□ 9.5
YBX3P16989 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.26e-9■□□□□ 9.5
YBX3P16989 USP42-203ENST00000426246 3611 ntTSL 214.37□□□□□ -0.116e-9■□□□□ 9.5
YBX3P16989 USP42-206ENST00000479544 4286 ntTSL 1 (best)13.83□□□□□ -0.26e-9■□□□□ 9.5
YBX3P16989 C19orf53-205ENST00000592760 357 ntTSL 37.87□□□□□ -1.152e-8■□□□□ 9.5
YBX3P16989 TUBB6-206ENST00000587204 408 ntTSL 219.24■□□□□ 0.673e-7■□□□□ 9.5
YBX3P16989 CCT5-209ENST00000511700 582 ntTSL 314.48□□□□□ -0.098e-10■□□□□ 9.5
YBX3P16989 CCT5-204ENST00000503454 762 ntTSL 310.17□□□□□ -0.788e-10■□□□□ 9.5
YBX3P16989 CCT5-215ENST00000625723 135 ntTSL 5 BASIC8.34□□□□□ -1.078e-10■□□□□ 9.5
YBX3P16989 CCT5-211ENST00000512975 578 ntTSL 48.01□□□□□ -1.138e-10■□□□□ 9.5
YBX3P16989 SLC16A1-202ENST00000429288 865 ntTSL 314.5□□□□□ -0.094e-7■□□□□ 9.5
YBX3P16989 GUK1-215ENST00000462807 628 ntTSL 234.08■■■■□ 3.057e-15■□□□□ 9.5
YBX3P16989 GUK1-228ENST00000485168 737 ntTSL 322.63■■□□□ 1.217e-15■□□□□ 9.5
YBX3P16989 GUK1-214ENST00000460224 639 ntTSL 520.51■□□□□ 0.877e-15■□□□□ 9.5
YBX3P16989 GUK1-238ENST00000498092 865 ntTSL 519.47■□□□□ 0.717e-15■□□□□ 9.5
YBX3P16989 GUK1-223ENST00000478725 414 ntTSL 318.24■□□□□ 0.517e-15■□□□□ 9.5
YBX3P16989 GUK1-221ENST00000472939 314 ntTSL 318.12■□□□□ 0.497e-15■□□□□ 9.5
YBX3P16989 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC24.11■■□□□ 1.456e-18■□□□□ 9.5
YBX3P16989 TCERG1-207ENST00000507175 1984 ntTSL 221.23■□□□□ 0.994e-8■□□□□ 9.5
YBX3P16989 TCERG1-202ENST00000394421 3633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.44e-8■□□□□ 9.5
YBX3P16989 TCERG1-201ENST00000296702 4654 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.554e-8■□□□□ 9.5
YBX3P16989 TCERG1-216ENST00000549332 3518 ntTSL 511.36□□□□□ -0.594e-8■□□□□ 9.5
YBX3P16989 HIST1H4C-201ENST00000377803 435 ntAPPRIS P1 BASIC15.61■□□□□ 0.091e-17■□□□□ 9.5
YBX3P16989 AHCY-206ENST00000606061 1170 ntTSL 225.6■■□□□ 1.697e-14■□□□□ 9.5
YBX3P16989 DDX41-202ENST00000503078 2375 ntTSL 224.75■■□□□ 1.552e-6■□□□□ 9.5
YBX3P16989 DDX41-201ENST00000330503 2137 ntTSL 1 (best)18.94■□□□□ 0.622e-6■□□□□ 9.5
YBX3P16989 DDX41-205ENST00000505081 2949 ntTSL 216.29■□□□□ 0.22e-6■□□□□ 9.5
YBX3P16989 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.052e-6■□□□□ 9.5
YBX3P16989 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.38■□□□□ 0.856e-7■□□□□ 9.5
YBX3P16989 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.88□□□□□ -0.036e-7■□□□□ 9.5
YBX3P16989 LHX6-204ENST00000394319 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.126e-7■□□□□ 9.5
YBX3P16989 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.86□□□□□ -0.196e-7■□□□□ 9.5
YBX3P16989 LHX6-202ENST00000373754 3278 ntTSL 1 (best) BASIC12.06□□□□□ -0.486e-7■□□□□ 9.5
YBX3P16989 LHX6-203ENST00000373755 3384 ntTSL 1 (best) BASIC11.88□□□□□ -0.516e-7■□□□□ 9.5
YBX3P16989 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.172e-6■□□□□ 9.5
YBX3P16989 SCAF4-206ENST00000485790 1282 ntTSL 218.64■□□□□ 0.571e-6■□□□□ 9.4
YBX3P16989 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.05■■■□□ 2.562e-8■□□□□ 9.4
YBX3P16989 LMAN2-207ENST00000514458 616 ntTSL 528.36■■■□□ 2.132e-8■□□□□ 9.4
YBX3P16989 LMAN2-202ENST00000502560 876 ntTSL 325.92■■□□□ 1.742e-8■□□□□ 9.4
YBX3P16989 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.432e-8■□□□□ 9.4
YBX3P16989 SLC2A4RG-204ENST00000482718 541 ntTSL 234.98■■■■□ 3.192e-15■□□□□ 9.4
YBX3P16989 SLC2A4RG-205ENST00000485897 518 ntTSL 529.64■■■□□ 2.342e-15■□□□□ 9.4
YBX3P16989 SLC2A4RG-206ENST00000491109 637 ntTSL 220.03■□□□□ 0.82e-15■□□□□ 9.4
YBX3P16989 SON-218ENST00000484294 500 ntTSL 57.98□□□□□ -1.133e-9■□□□□ 9.4
YBX3P16989 PPP2R5C-217ENST00000556218 987 ntTSL 1 (best)7.63□□□□□ -1.195e-8■□□□□ 9.4
YBX3P16989 VHL-203ENST00000477538 958 ntTSL 1 (best)19.86■□□□□ 0.778e-9■□□□□ 9.4
YBX3P16989 TCF3-219ENST00000610756 1343 ntTSL 1 (best)25.39■■□□□ 1.661e-10■□□□□ 9.4
YBX3P16989 TCF3-213ENST00000590436 1149 ntTSL 524.5■■□□□ 1.511e-10■□□□□ 9.4
YBX3P16989 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.31■■□□□ 1.161e-10■□□□□ 9.4
Retrieved 100 of 29,075 protein–RNA pairs in 140.7 ms