RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 NISCHQ9Y2I1 1504 aa28.8■■■□□ 2.2
USP42-203ENST00000426246 CCDC180Q9P1Z9 1646 aa25.05■■□□□ 1.6
USP42-203ENST00000426246 ZCCHC6Q5VYS8 1495 aaKnown RBP24.25■■□□□ 1.47
USP42-203ENST00000426246 DCAF1Q9Y4B6 1507 aa23.82■■□□□ 1.4
USP42-203ENST00000426246 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
USP42-203ENST00000426246 DCAF8L2P0C7V8 631 aa23.49■■□□□ 1.35
USP42-203ENST00000426246 MYO15BQ96JP2 1530 aa23.48■■□□□ 1.35
USP42-203ENST00000426246 ABCC9O60706 1549 aa23.47■■□□□ 1.35
USP42-203ENST00000426246 SUPT5HO00267 1087 aaKnown RBP23.45■■□□□ 1.34
USP42-203ENST00000426246 NACADO15069 1562 aa23.24■■□□□ 1.31
USP42-203ENST00000426246 SCRIBQ14160 1630 aa23.04■■□□□ 1.28
USP42-203ENST00000426246 RB1CC1Q8TDY2 1594 aa22.98■■□□□ 1.27
USP42-203ENST00000426246 UNC13AQ9UPW8 1703 aa22.73■■□□□ 1.23
USP42-203ENST00000426246 BICRAQ9NZM4 1560 aa22.45■■□□□ 1.18
USP42-203ENST00000426246 RSF1Q96T23 1441 aaPredicted RBP22.4■■□□□ 1.18
USP42-203ENST00000426246 CECR2Q9BXF3 1484 aa22.4■■□□□ 1.18
USP42-203ENST00000426246 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.18
USP42-203ENST00000426246 PCGF6Q9BYE7 350 aa22.3■■□□□ 1.16
USP42-203ENST00000426246 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
USP42-203ENST00000426246 BAZ1AQ9NRL2 1556 aaPredicted RBP22.18■■□□□ 1.14
USP42-203ENST00000426246 PABPN1Q86U42 306 aaKnown RBP eCLIP22.14■■□□□ 1.13
USP42-203ENST00000426246 WIZO95785 1651 aa22.13■■□□□ 1.13
USP42-203ENST00000426246 SMARCA4P51532 1647 aa22.12■■□□□ 1.13
USP42-203ENST00000426246 LOC105371045A0A1W2PR82 267 aa22.01■■□□□ 1.11
USP42-203ENST00000426246 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
USP42-203ENST00000426246 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
USP42-203ENST00000426246 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.11
USP42-203ENST00000426246 PEG3Q9GZU2 1588 aa21.89■■□□□ 1.09
USP42-203ENST00000426246 TOP2AP11388 1531 aaKnown RBP21.85■■□□□ 1.09
USP42-203ENST00000426246 HRCP23327 699 aa21.7■■□□□ 1.06
USP42-203ENST00000426246 SMARCA2P51531 1590 aa21.69■■□□□ 1.06
USP42-203ENST00000426246 ATAD2BQ9ULI0 1458 aa21.69■■□□□ 1.06
USP42-203ENST00000426246 EIF4G1Q04637 1599 aaKnown RBP21.68■■□□□ 1.06
USP42-203ENST00000426246 CCDC88BA6NC98 1476 aa21.63■■□□□ 1.05
USP42-203ENST00000426246 TTBK1Q5TCY1 1321 aaPredicted RBP21.59■■□□□ 1.05
USP42-203ENST00000426246 BAZ1BQ9UIG0 1483 aaKnown RBP21.51■■□□□ 1.03
USP42-203ENST00000426246 NCAPD3P42695 1498 aa21.47■■□□□ 1.03
USP42-203ENST00000426246 HMGXB3Q12766 1538 aa21.47■■□□□ 1.03
USP42-203ENST00000426246 TRIM41Q8WV44 630 aa21.37■■□□□ 1.01
USP42-203ENST00000426246 CC2D2AQ9P2K1 1620 aa21.32■■□□□ 1
USP42-203ENST00000426246 ABCC8Q09428 1581 aa21.25■□□□□ 0.99
USP42-203ENST00000426246 TRIM26Q12899 539 aaPredicted RBP21.13■□□□□ 0.97
USP42-203ENST00000426246 CFTRP13569 1480 aa21.05■□□□□ 0.96
USP42-203ENST00000426246 SYNJ1O43426 1573 aa21.03■□□□□ 0.96
USP42-203ENST00000426246 PRDM2Q13029 1718 aa21.02■□□□□ 0.96
USP42-203ENST00000426246 WRNQ14191 1432 aaPredicted RBP eCLIP21■□□□□ 0.95
USP42-203ENST00000426246 RANGAP1P46060 587 aaPredicted RBP20.97■□□□□ 0.95
USP42-203ENST00000426246 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
USP42-203ENST00000426246 BIVM-ERCC5R4GMW8 1640 aa20.9■□□□□ 0.94
USP42-203ENST00000426246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.9■□□□□ 0.94
USP42-203ENST00000426246 CADPSQ9ULU8 1353 aa20.88■□□□□ 0.93
USP42-203ENST00000426246 SOGA1O94964 1423 aa20.86■□□□□ 0.93
USP42-203ENST00000426246 CCER1Q8TC90 406 aaPredicted RBP20.84■□□□□ 0.93
USP42-203ENST00000426246 CUX1P39880 1505 aa20.82■□□□□ 0.92
USP42-203ENST00000426246 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
USP42-203ENST00000426246 DNAJC5BQ9UF47 199 aa20.8■□□□□ 0.92
USP42-203ENST00000426246 NESP48681 1621 aa20.73■□□□□ 0.91
USP42-203ENST00000426246 EEA1Q15075 1411 aa20.73■□□□□ 0.91
USP42-203ENST00000426246 LAMC3Q9Y6N6 1575 aa20.7■□□□□ 0.9
USP42-203ENST00000426246 FANCD2Q9BXW9 1451 aa20.67■□□□□ 0.9
USP42-203ENST00000426246 UBTFP17480 764 aaKnown RBP20.64■□□□□ 0.89
USP42-203ENST00000426246 CSRNP3Q8WYN3 585 aa20.6■□□□□ 0.89
USP42-203ENST00000426246 YTHDC1Q96MU7 727 aaKnown RBP20.6■□□□□ 0.89
USP42-203ENST00000426246 KIF21BO75037 1637 aa20.57■□□□□ 0.88
USP42-203ENST00000426246 ZEB1P37275 1124 aaPredicted RBP20.56■□□□□ 0.88
USP42-203ENST00000426246 DNMBPQ6XZF7 1577 aa20.54■□□□□ 0.88
USP42-203ENST00000426246 KIF21AQ7Z4S6 1674 aa20.52■□□□□ 0.88
USP42-203ENST00000426246 FGD5Q6ZNL6 1462 aa20.51■□□□□ 0.87
USP42-203ENST00000426246 TOPBP1Q92547 1522 aa20.49■□□□□ 0.87
USP42-203ENST00000426246 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
USP42-203ENST00000426246 GOLGA3Q08378 1498 aa20.48■□□□□ 0.87
USP42-203ENST00000426246 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
USP42-203ENST00000426246 TNIKQ9UKE5 1360 aa20.46■□□□□ 0.87
USP42-203ENST00000426246 PDS5BQ9NTI5 1447 aa20.45■□□□□ 0.86
USP42-203ENST00000426246 HNRNPUL2Q1KMD3 747 aaKnown RBP20.45■□□□□ 0.86
USP42-203ENST00000426246 PRXQ9BXM0 1461 aa20.43■□□□□ 0.86
USP42-203ENST00000426246 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
USP42-203ENST00000426246 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
USP42-203ENST00000426246 POLA1P09884 1462 aaPredicted RBP20.42■□□□□ 0.86
USP42-203ENST00000426246 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.85
USP42-203ENST00000426246 CEP162Q5TB80 1403 aa20.38■□□□□ 0.85
USP42-203ENST00000426246 WDR97A6NE52 1622 aa20.38■□□□□ 0.85
USP42-203ENST00000426246 SCAF1Q9H7N4 1312 aaKnown RBP20.37■□□□□ 0.85
USP42-203ENST00000426246 CUX2O14529 1486 aa20.36■□□□□ 0.85
USP42-203ENST00000426246 ABCA10Q8WWZ4 1543 aa20.36■□□□□ 0.85
USP42-203ENST00000426246 RAD54L2Q9Y4B4 1467 aa20.35■□□□□ 0.85
USP42-203ENST00000426246 IGF1RP08069 1367 aa20.3■□□□□ 0.84
USP42-203ENST00000426246 DIEXFQ68CQ4 756 aaKnown RBP20.27■□□□□ 0.84
USP42-203ENST00000426246 TARBP1Q13395 1621 aaKnown RBP20.25■□□□□ 0.83
USP42-203ENST00000426246 ABCA5Q8WWZ7 1642 aa20.24■□□□□ 0.83
USP42-203ENST00000426246 MRC2Q9UBG0 1479 aa20.23■□□□□ 0.83
USP42-203ENST00000426246 APLP2Q06481 763 aa20.2■□□□□ 0.82
USP42-203ENST00000426246 WDR62O43379 1518 aa20.2■□□□□ 0.82
USP42-203ENST00000426246 NEUROD1Q13562 356 aa20.19■□□□□ 0.82
USP42-203ENST00000426246 GTF3C3Q9Y5Q9 886 aa20.17■□□□□ 0.82
USP42-203ENST00000426246 CLIP1P30622 1438 aa20.15■□□□□ 0.82
USP42-203ENST00000426246 ITGAEP38570 1179 aa20.15■□□□□ 0.82
USP42-203ENST00000426246 THOC2Q8NI27 1593 aaKnown RBP20.15■□□□□ 0.82
USP42-203ENST00000426246 CARMIL1Q5VZK9 1371 aa20.14■□□□□ 0.81
USP42-203ENST00000426246 CUL7Q14999 1698 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms