RNA–Protein interactions for RNA: ENST00000535916.5

VBP1-203, Transcript of VHL binding protein 1, humanhuman

TSL 2 BASIC

Gene VBP1, Length 944 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1-203ENST00000535916 AEBP2Q6ZN18 517 aaPredicted RBP32.82■■■□□ 2.84
VBP1-203ENST00000535916 CHIC1Q5VXU3 224 aa31.39■■■□□ 2.62
VBP1-203ENST00000535916 SENP3Q9H4L4 574 aaPredicted RBP27.9■■■□□ 2.06
VBP1-203ENST00000535916 PHF23Q9BUL5 403 aaPredicted RBP27.6■■■□□ 2.01
VBP1-203ENST00000535916 FOXD1Q16676 465 aa26.05■■□□□ 1.76
VBP1-203ENST00000535916 POTEDQ86YR6 584 aa26.02■■□□□ 1.76
VBP1-203ENST00000535916 PLPPR3Q6T4P5 718 aa25.18■■□□□ 1.62
VBP1-203ENST00000535916 MSH5O43196 834 aa24.88■■□□□ 1.57
VBP1-203ENST00000535916 PPP6R1Q9UPN7 881 aa24.54■■□□□ 1.52
VBP1-203ENST00000535916 ADRA2BP18089 450 aa24.47■■□□□ 1.51
VBP1-203ENST00000535916 PIAS4Q8N2W9 510 aaPredicted RBP24.36■■□□□ 1.49
VBP1-203ENST00000535916 MAPK8IP2Q13387 824 aaPredicted RBP22.41■■□□□ 1.18
VBP1-203ENST00000535916 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
VBP1-203ENST00000535916 DMRT2Q9Y5R5 561 aa22.18■■□□□ 1.14
VBP1-203ENST00000535916 PPP4R3CPQ6ZMV5 832 aa22.13■■□□□ 1.13
VBP1-203ENST00000535916 CACNB1Q02641 598 aaPredicted RBP22.01■■□□□ 1.11
VBP1-203ENST00000535916 CNKSR2Q8WXI2 1034 aa21.63■■□□□ 1.05
VBP1-203ENST00000535916 HOXD11P31277 338 aaPredicted RBP21.46■■□□□ 1.03
VBP1-203ENST00000535916 RNF216Q9NWF9 866 aaPredicted RBP21.37■■□□□ 1.01
VBP1-203ENST00000535916 NCBP3Q53F19 620 aaKnown RBP21.32■■□□□ 1
VBP1-203ENST00000535916 DCAF8L1A6NGE4 600 aa21.28■■□□□ 1
VBP1-203ENST00000535916 RNF39Q9H2S5 420 aa21.07■□□□□ 0.96
VBP1-203ENST00000535916 NPM3O75607 178 aaKnown RBP21.06■□□□□ 0.96
VBP1-203ENST00000535916 KCNA4P22459 653 aa20.91■□□□□ 0.94
VBP1-203ENST00000535916 C1QBPQ07021 282 aaKnown RBP20.74■□□□□ 0.91
VBP1-203ENST00000535916 DNAJC5BQ9UF47 199 aa20.62■□□□□ 0.89
VBP1-203ENST00000535916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.46■□□□□ 0.875e-6■■□□□ 11.4
VBP1-203ENST00000535916 POTEHQ6S545 545 aa20.21■□□□□ 0.83
VBP1-203ENST00000535916 U3KPZ7 1027 aaPredicted RBP20.07■□□□□ 0.8
VBP1-203ENST00000535916 SLC4A2P04920 1241 aa20.06■□□□□ 0.8
VBP1-203ENST00000535916 SLC4A1APQ9BWU0 796 aaKnown RBP19.78■□□□□ 0.76
VBP1-203ENST00000535916 SPINK5Q9NQ38 1064 aaPredicted RBP19.72■□□□□ 0.75
VBP1-203ENST00000535916 CAPN15O75808 1086 aa19.65■□□□□ 0.74
VBP1-203ENST00000535916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.54■□□□□ 0.72
VBP1-203ENST00000535916 HNRNPUL2Q1KMD3 747 aaKnown RBP19.54■□□□□ 0.72
VBP1-203ENST00000535916 DSG3P32926 999 aa19.47■□□□□ 0.71
VBP1-203ENST00000535916 APLP2Q06481 763 aa19.47■□□□□ 0.71
VBP1-203ENST00000535916 SAMD1Q6SPF0 538 aaPredicted RBP19.46■□□□□ 0.71
VBP1-203ENST00000535916 MYCNP04198 464 aaPredicted RBP19.45■□□□□ 0.7
VBP1-203ENST00000535916 FOXD4L1Q9NU39 408 aa19.42■□□□□ 0.7
VBP1-203ENST00000535916 TRHP20396 242 aaPredicted RBP19.41■□□□□ 0.7
VBP1-203ENST00000535916 ZNF219Q9P2Y4 722 aaPredicted RBP19.34■□□□□ 0.69
VBP1-203ENST00000535916 ZBTB22O15209 634 aa19.26■□□□□ 0.67
VBP1-203ENST00000535916 ABCB7O75027 752 aa19.25■□□□□ 0.67
VBP1-203ENST00000535916 ATF5Q9Y2D1 282 aaPredicted RBP19.03■□□□□ 0.64
VBP1-203ENST00000535916 POLA2Q14181 598 aa18.93■□□□□ 0.62
VBP1-203ENST00000535916 ATXN8OSP0DMR3 200 aa18.75■□□□□ 0.59
VBP1-203ENST00000535916 RBM42Q9BTD8 480 aaKnown RBP18.62■□□□□ 0.57
VBP1-203ENST00000535916 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
VBP1-203ENST00000535916 CHRDL2Q6WN34 429 aa18.57■□□□□ 0.56
VBP1-203ENST00000535916 ZBTB12Q9Y330 459 aaPredicted RBP18.53■□□□□ 0.56
VBP1-203ENST00000535916 EHMT2Q96KQ7 1210 aa18.52■□□□□ 0.56
VBP1-203ENST00000535916 SP7Q8TDD2 431 aaPredicted RBP18.46■□□□□ 0.55
VBP1-203ENST00000535916 OSCARQ8IYS5 282 aa18.36■□□□□ 0.53
VBP1-203ENST00000535916 FBLN2P98095 1184 aa18.22■□□□□ 0.51
VBP1-203ENST00000535916 AKT1S1Q96B36 256 aa18.18■□□□□ 0.5
VBP1-203ENST00000535916 MKRN4PQ13434 485 aaPredicted RBP18.16■□□□□ 0.5
VBP1-203ENST00000535916 REM2Q8IYK8 340 aaPredicted RBP18.03■□□□□ 0.48
VBP1-203ENST00000535916 SPDYE2BA6NHP3 402 aa18■□□□□ 0.47
VBP1-203ENST00000535916 SPDYE6P0CI01 402 aa18■□□□□ 0.47
VBP1-203ENST00000535916 SPDYE2Q495Y8 402 aa18■□□□□ 0.47
VBP1-203ENST00000535916 HAX1O00165 279 aa17.9■□□□□ 0.46
VBP1-203ENST00000535916 PIP4P2Q8N4L2 257 aa17.88■□□□□ 0.45
VBP1-203ENST00000535916 PITPNM1O00562 1244 aa17.85■□□□□ 0.45
VBP1-203ENST00000535916 ZNF692Q9BU19 519 aaPredicted RBP17.84■□□□□ 0.45
VBP1-203ENST00000535916 SSUH2Q9Y2M2 353 aa17.82■□□□□ 0.44
VBP1-203ENST00000535916 FXR2P51116 673 aaKnown RBP eCLIP17.62■□□□□ 0.41
VBP1-203ENST00000535916 SPDYE1Q8NFV5 336 aaPredicted RBP17.62■□□□□ 0.41
VBP1-203ENST00000535916 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
VBP1-203ENST00000535916 CLEC11AQ9Y240 323 aa17.61■□□□□ 0.41
VBP1-203ENST00000535916 EVX2Q03828 476 aa17.47■□□□□ 0.39
VBP1-203ENST00000535916 SPDYE4A6NLX3 237 aa17.42■□□□□ 0.38
VBP1-203ENST00000535916 PRKAR2AP13861 404 aaKnown RBP17.38■□□□□ 0.37
VBP1-203ENST00000535916 PRR29P0C7W0 189 aa17.34■□□□□ 0.37
VBP1-203ENST00000535916 LHX8Q68G74 356 aa17.3■□□□□ 0.36
VBP1-203ENST00000535916 CHADLQ6NUI6 762 aa17.27■□□□□ 0.36
VBP1-203ENST00000535916 PLSCR2Q9NRY7 297 aa17.15■□□□□ 0.34
VBP1-203ENST00000535916 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
VBP1-203ENST00000535916 GABBR2O75899 941 aa17.09■□□□□ 0.33
VBP1-203ENST00000535916 C19orf67A6NJJ6 358 aa17.07■□□□□ 0.32
VBP1-203ENST00000535916 PROM2Q8N271 834 aa17.04■□□□□ 0.32
VBP1-203ENST00000535916 FARP1Q9Y4F1 1045 aaPredicted RBP17.01■□□□□ 0.31
VBP1-203ENST00000535916 CREBZFQ9NS37 354 aa17■□□□□ 0.31
VBP1-203ENST00000535916 FKBP8Q14318 412 aa16.85■□□□□ 0.29
VBP1-203ENST00000535916 CD44P16070 742 aaKnown RBP16.84■□□□□ 0.29
VBP1-203ENST00000535916 MNX1P50219 401 aaPredicted RBP16.73■□□□□ 0.27
VBP1-203ENST00000535916 POTEIP0CG38 1075 aa16.66■□□□□ 0.26
VBP1-203ENST00000535916 ZRANB1Q9UGI0 708 aa16.66■□□□□ 0.26
VBP1-203ENST00000535916 NPM1P06748 294 aaKnown RBP eCLIP16.65■□□□□ 0.26
VBP1-203ENST00000535916 ZNF579Q8NAF0 562 aaKnown RBP16.59■□□□□ 0.25
VBP1-203ENST00000535916 MIER1Q8N108 512 aa16.58■□□□□ 0.24
VBP1-203ENST00000535916 PAK3O75914 559 aaPredicted RBP16.54■□□□□ 0.24
VBP1-203ENST00000535916 CLCN6P51797 869 aa16.52■□□□□ 0.24
VBP1-203ENST00000535916 PLEKHG5O94827 1062 aa16.51■□□□□ 0.23
VBP1-203ENST00000535916 DCBLD2Q96PD2 775 aa16.49■□□□□ 0.23
VBP1-203ENST00000535916 PLCD3Q8N3E9 789 aa16.48■□□□□ 0.23
VBP1-203ENST00000535916 PHF12Q96QT6 1004 aa16.47■□□□□ 0.23
VBP1-203ENST00000535916 TSPYL2Q9H2G4 693 aaPredicted RBP16.41■□□□□ 0.22
VBP1-203ENST00000535916 GALR2O43603 387 aaPredicted RBP16.4■□□□□ 0.22
VBP1-203ENST00000535916 POTEMA6NI47 508 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms