RNA–Protein interactions for RNA: ENST00000505081.5

DDX41-205, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 2,949 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-205ENST00000505081 NISCHQ9Y2I1 1504 aa32.84■■■□□ 2.85
DDX41-205ENST00000505081 SHROOM4Q9ULL8 1493 aa28.38■■■□□ 2.13
DDX41-205ENST00000505081 SUPT5HO00267 1087 aaKnown RBP27.87■■■□□ 2.05
DDX41-205ENST00000505081 ZCCHC6Q5VYS8 1495 aaKnown RBP27.79■■■□□ 2.04
DDX41-205ENST00000505081 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
DDX41-205ENST00000505081 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
DDX41-205ENST00000505081 CHIC1Q5VXU3 224 aa27.07■■□□□ 1.92
DDX41-205ENST00000505081 MYO15BQ96JP2 1530 aa27.06■■□□□ 1.92
DDX41-205ENST00000505081 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
DDX41-205ENST00000505081 PCGF6Q9BYE7 350 aa26.45■■□□□ 1.82
DDX41-205ENST00000505081 HRCP23327 699 aa26.44■■□□□ 1.82
DDX41-205ENST00000505081 LOC105371045A0A1W2PR82 267 aa26.4■■□□□ 1.82
DDX41-205ENST00000505081 ABCC9O60706 1549 aa26.24■■□□□ 1.79
DDX41-205ENST00000505081 SCRIBQ14160 1630 aa26.24■■□□□ 1.79
DDX41-205ENST00000505081 RSF1Q96T23 1441 aaPredicted RBP26.1■■□□□ 1.77
DDX41-205ENST00000505081 PPARGC1BQ86YN6 1023 aaKnown RBP26.07■■□□□ 1.76
DDX41-205ENST00000505081 RB1CC1Q8TDY2 1594 aa25.89■■□□□ 1.74
DDX41-205ENST00000505081 TRIM41Q8WV44 630 aa25.85■■□□□ 1.73
DDX41-205ENST00000505081 FAM9AQ8IZU1 332 aaPredicted RBP25.8■■□□□ 1.72
DDX41-205ENST00000505081 TRIM26Q12899 539 aaPredicted RBP25.77■■□□□ 1.72
DDX41-205ENST00000505081 CECR2Q9BXF3 1484 aa25.74■■□□□ 1.71
DDX41-205ENST00000505081 EHMT2Q96KQ7 1210 aa25.7■■□□□ 1.7
DDX41-205ENST00000505081 NACADO15069 1562 aa25.64■■□□□ 1.69
DDX41-205ENST00000505081 MROH2BQ7Z745 1585 aa25.63■■□□□ 1.69
DDX41-205ENST00000505081 WIZO95785 1651 aa25.51■■□□□ 1.67
DDX41-205ENST00000505081 BAZ1AQ9NRL2 1556 aaPredicted RBP25.24■■□□□ 1.63
DDX41-205ENST00000505081 ZEB1P37275 1124 aaPredicted RBP25.16■■□□□ 1.62
DDX41-205ENST00000505081 EIF4G1Q04637 1599 aaKnown RBP25.12■■□□□ 1.61
DDX41-205ENST00000505081 ABCC8Q09428 1581 aa25.04■■□□□ 1.6
DDX41-205ENST00000505081 TOP2AP11388 1531 aaKnown RBP24.99■■□□□ 1.59
DDX41-205ENST00000505081 CCDC88BA6NC98 1476 aa24.99■■□□□ 1.59
DDX41-205ENST00000505081 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
DDX41-205ENST00000505081 UNC13AQ9UPW8 1703 aa24.94■■□□□ 1.58
DDX41-205ENST00000505081 SMARCA2P51531 1590 aa24.91■■□□□ 1.58
DDX41-205ENST00000505081 TTBK1Q5TCY1 1321 aaPredicted RBP24.88■■□□□ 1.57
DDX41-205ENST00000505081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.88■■□□□ 1.57
DDX41-205ENST00000505081 PABPN1Q86U42 306 aaKnown RBP eCLIP24.83■■□□□ 1.573e-7■■■■□ 23.8
DDX41-205ENST00000505081 SOGA1O94964 1423 aa24.83■■□□□ 1.57
DDX41-205ENST00000505081 CCER1Q8TC90 406 aaPredicted RBP24.74■■□□□ 1.55
DDX41-205ENST00000505081 RUSC2Q8N2Y8 1516 aa24.73■■□□□ 1.55
DDX41-205ENST00000505081 CEP162Q5TB80 1403 aa24.72■■□□□ 1.55
DDX41-205ENST00000505081 CSRNP3Q8WYN3 585 aa24.65■■□□□ 1.54
DDX41-205ENST00000505081 UBTFP17480 764 aaKnown RBP24.63■■□□□ 1.53
DDX41-205ENST00000505081 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
DDX41-205ENST00000505081 WRNQ14191 1432 aaPredicted RBP eCLIP24.62■■□□□ 1.53
DDX41-205ENST00000505081 TNIKQ9UKE5 1360 aa24.61■■□□□ 1.53
DDX41-205ENST00000505081 SCAF1Q9H7N4 1312 aaKnown RBP24.53■■□□□ 1.52
DDX41-205ENST00000505081 EEA1Q15075 1411 aa24.5■■□□□ 1.51
DDX41-205ENST00000505081 GOLGA3Q08378 1498 aa24.44■■□□□ 1.5
DDX41-205ENST00000505081 SYNJ1O43426 1573 aa24.41■■□□□ 1.5
DDX41-205ENST00000505081 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
DDX41-205ENST00000505081 ATAD2BQ9ULI0 1458 aa24.33■■□□□ 1.49
DDX41-205ENST00000505081 DIEXFQ68CQ4 756 aaKnown RBP24.31■■□□□ 1.48
DDX41-205ENST00000505081 BAZ1BQ9UIG0 1483 aaKnown RBP24.28■■□□□ 1.48
DDX41-205ENST00000505081 RANGAP1P46060 587 aaPredicted RBP24.28■■□□□ 1.48
DDX41-205ENST00000505081 CEP164Q9UPV0 1460 aa24.27■■□□□ 1.48
DDX41-205ENST00000505081 HNRNPUL2Q1KMD3 747 aaKnown RBP24.23■■□□□ 1.47
DDX41-205ENST00000505081 CLIP1P30622 1438 aa24.22■■□□□ 1.47
DDX41-205ENST00000505081 NEUROD1Q13562 356 aa24.21■■□□□ 1.47
DDX41-205ENST00000505081 KIF21BO75037 1637 aa24.21■■□□□ 1.47
DDX41-205ENST00000505081 RAPGEF2Q9Y4G8 1499 aa24.18■■□□□ 1.46
DDX41-205ENST00000505081 ACIN1Q9UKV3 1341 aaKnown RBP24.18■■□□□ 1.46
DDX41-205ENST00000505081 VPS8Q8N3P4 1428 aa24.1■■□□□ 1.45
DDX41-205ENST00000505081 ZNF316A6NFI3 1004 aaPredicted RBP24.06■■□□□ 1.44
DDX41-205ENST00000505081 APLP2Q06481 763 aa24.04■■□□□ 1.44
DDX41-205ENST00000505081 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
DDX41-205ENST00000505081 GTF3C3Q9Y5Q9 886 aa23.97■■□□□ 1.43
DDX41-205ENST00000505081 CENPBP07199 599 aaPredicted RBP23.95■■□□□ 1.42
DDX41-205ENST00000505081 BIVM-ERCC5R4GMW8 1640 aa23.89■■□□□ 1.42
DDX41-205ENST00000505081 PELP1Q8IZL8 1130 aaKnown RBP23.88■■□□□ 1.41
DDX41-205ENST00000505081 YTHDC1Q96MU7 727 aaKnown RBP23.87■■□□□ 1.41
DDX41-205ENST00000505081 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
DDX41-205ENST00000505081 MIER1Q8N108 512 aa23.83■■□□□ 1.4
DDX41-205ENST00000505081 CUX1P39880 1505 aa23.82■■□□□ 1.4
DDX41-205ENST00000505081 KANK4Q5T7N3 995 aaPredicted RBP23.82■■□□□ 1.4
DDX41-205ENST00000505081 ARAP1Q96P48 1450 aa23.82■■□□□ 1.4
DDX41-205ENST00000505081 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
DDX41-205ENST00000505081 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
DDX41-205ENST00000505081 HMGXB3Q12766 1538 aa23.74■■□□□ 1.39
DDX41-205ENST00000505081 KIF27Q86VH2 1401 aa23.7■■□□□ 1.38
DDX41-205ENST00000505081 DHX57Q6P158 1386 aaKnown RBP23.66■■□□□ 1.38
DDX41-205ENST00000505081 CFTRP13569 1480 aa23.66■■□□□ 1.38
DDX41-205ENST00000505081 ARHGAP35Q9NRY4 1499 aa23.59■■□□□ 1.37
DDX41-205ENST00000505081 ITGAEP38570 1179 aa23.58■■□□□ 1.37
DDX41-205ENST00000505081 RRBP1Q9P2E9 1410 aaKnown RBP23.53■■□□□ 1.36
DDX41-205ENST00000505081 CUX2O14529 1486 aa23.52■■□□□ 1.36
DDX41-205ENST00000505081 CLSPNQ9HAW4 1339 aa23.49■■□□□ 1.35
DDX41-205ENST00000505081 IGF1RP08069 1367 aa23.49■■□□□ 1.35
DDX41-205ENST00000505081 CCNB3Q8WWL7 1395 aa23.48■■□□□ 1.35
DDX41-205ENST00000505081 CADPSQ9ULU8 1353 aa23.39■■□□□ 1.34
DDX41-205ENST00000505081 FGD5Q6ZNL6 1462 aa23.38■■□□□ 1.33
DDX41-205ENST00000505081 CARMIL1Q5VZK9 1371 aa23.38■■□□□ 1.33
DDX41-205ENST00000505081 PRDM2Q13029 1718 aa23.37■■□□□ 1.33
DDX41-205ENST00000505081 P3H3Q8IVL6 736 aa23.36■■□□□ 1.33
DDX41-205ENST00000505081 RAB3GAP2Q9H2M9 1393 aa23.33■■□□□ 1.32
DDX41-205ENST00000505081 TIAM1Q13009 1591 aa23.31■■□□□ 1.32
DDX41-205ENST00000505081 ATP1B4Q9UN42 357 aaPredicted RBP23.29■■□□□ 1.32
DDX41-205ENST00000505081 PHLDB1Q86UU1 1377 aa23.27■■□□□ 1.31
DDX41-205ENST00000505081 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
DDX41-205ENST00000505081 LRRC9Q6ZRR7 1453 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms