RNA–Protein interactions for RNA: ENST00000460509.1

VBP1-202, Transcript of VHL binding protein 1, humanhuman

TSL 2

Gene VBP1, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1-202ENST00000460509 AEBP2Q6ZN18 517 aaPredicted RBP23.89■■□□□ 1.41
VBP1-202ENST00000460509 CHIC1Q5VXU3 224 aa22.68■■□□□ 1.22
VBP1-202ENST00000460509 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
VBP1-202ENST00000460509 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
VBP1-202ENST00000460509 FOXD1Q16676 465 aa18.95■□□□□ 0.62
VBP1-202ENST00000460509 PLPPR3Q6T4P5 718 aa18.38■□□□□ 0.53
VBP1-202ENST00000460509 POTEDQ86YR6 584 aa18.14■□□□□ 0.49
VBP1-202ENST00000460509 PPP6R1Q9UPN7 881 aa17.81■□□□□ 0.44
VBP1-202ENST00000460509 ADRA2BP18089 450 aa17.76■□□□□ 0.43
VBP1-202ENST00000460509 PIAS4Q8N2W9 510 aaPredicted RBP17.72■□□□□ 0.43
VBP1-202ENST00000460509 MSH5O43196 834 aa17.64■□□□□ 0.41
VBP1-202ENST00000460509 MAPK8IP2Q13387 824 aaPredicted RBP16.31■□□□□ 0.2
VBP1-202ENST00000460509 PPP4R3CPQ6ZMV5 832 aa16.25■□□□□ 0.19
VBP1-202ENST00000460509 KCNA4P22459 653 aa16.18■□□□□ 0.18
VBP1-202ENST00000460509 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
VBP1-202ENST00000460509 DMRT2Q9Y5R5 561 aa16.11■□□□□ 0.17
VBP1-202ENST00000460509 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
VBP1-202ENST00000460509 CNKSR2Q8WXI2 1034 aa15.71■□□□□ 0.11
VBP1-202ENST00000460509 NPM3O75607 178 aaKnown RBP15.65■□□□□ 0.1
VBP1-202ENST00000460509 HOXD11P31277 338 aaPredicted RBP15.52■□□□□ 0.08
VBP1-202ENST00000460509 DCAF8L1A6NGE4 600 aa15.5■□□□□ 0.07
VBP1-202ENST00000460509 SLC4A1APQ9BWU0 796 aaKnown RBP15.47■□□□□ 0.07
VBP1-202ENST00000460509 RNF216Q9NWF9 866 aaPredicted RBP15.42■□□□□ 0.06
VBP1-202ENST00000460509 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
VBP1-202ENST00000460509 CACNB1Q02641 598 aaPredicted RBP15.15■□□□□ 0.02
VBP1-202ENST00000460509 RNF39Q9H2S5 420 aa15.1■□□□□ 0.01
VBP1-202ENST00000460509 CSRNP3Q8WYN3 585 aa15□□□□□ -0.01
VBP1-202ENST00000460509 DNAJC5BQ9UF47 199 aa14.99□□□□□ -0.01
VBP1-202ENST00000460509 ZBTB22O15209 634 aa14.86□□□□□ -0.03
VBP1-202ENST00000460509 C1QBPQ07021 282 aaKnown RBP14.85□□□□□ -0.03
VBP1-202ENST00000460509 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.045e-6■■□□□ 11.4
VBP1-202ENST00000460509 FOXD4L1Q9NU39 408 aa14.79□□□□□ -0.04
VBP1-202ENST00000460509 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
VBP1-202ENST00000460509 U3KPZ7 1027 aaPredicted RBP14.53□□□□□ -0.08
VBP1-202ENST00000460509 MYCNP04198 464 aaPredicted RBP14.46□□□□□ -0.09
VBP1-202ENST00000460509 SPINK5Q9NQ38 1064 aaPredicted RBP14.34□□□□□ -0.11
VBP1-202ENST00000460509 CAPN15O75808 1086 aa14.28□□□□□ -0.12
VBP1-202ENST00000460509 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.22□□□□□ -0.13
VBP1-202ENST00000460509 HNRNPUL2Q1KMD3 747 aaKnown RBP14.22□□□□□ -0.13
VBP1-202ENST00000460509 ATXN8OSP0DMR3 200 aa14.2□□□□□ -0.14
VBP1-202ENST00000460509 DSG3P32926 999 aa14.17□□□□□ -0.14
VBP1-202ENST00000460509 SAMD1Q6SPF0 538 aaPredicted RBP14.17□□□□□ -0.14
VBP1-202ENST00000460509 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
VBP1-202ENST00000460509 ATF5Q9Y2D1 282 aaPredicted RBP14.07□□□□□ -0.16
VBP1-202ENST00000460509 POTEHQ6S545 545 aa14.03□□□□□ -0.16
VBP1-202ENST00000460509 APLP2Q06481 763 aa14.02□□□□□ -0.17
VBP1-202ENST00000460509 ABCB7O75027 752 aa13.99□□□□□ -0.17
VBP1-202ENST00000460509 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
VBP1-202ENST00000460509 POLA2Q14181 598 aa13.7□□□□□ -0.22
VBP1-202ENST00000460509 FKBP8Q14318 412 aa13.61□□□□□ -0.23
VBP1-202ENST00000460509 FBLN2P98095 1184 aa13.49□□□□□ -0.25
VBP1-202ENST00000460509 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
VBP1-202ENST00000460509 MKRN4PQ13434 485 aaPredicted RBP13.44□□□□□ -0.26
VBP1-202ENST00000460509 ZBTB12Q9Y330 459 aaPredicted RBP13.38□□□□□ -0.27
VBP1-202ENST00000460509 SPDYE4A6NLX3 237 aa13.32□□□□□ -0.28
VBP1-202ENST00000460509 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
VBP1-202ENST00000460509 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
VBP1-202ENST00000460509 AKT1S1Q96B36 256 aa13.19□□□□□ -0.3
VBP1-202ENST00000460509 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
VBP1-202ENST00000460509 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
VBP1-202ENST00000460509 SPDYE2BA6NHP3 402 aa13.04□□□□□ -0.32
VBP1-202ENST00000460509 SPDYE6P0CI01 402 aa13.04□□□□□ -0.32
VBP1-202ENST00000460509 SPDYE2Q495Y8 402 aa13.04□□□□□ -0.32
VBP1-202ENST00000460509 FBXO3Q9UK99 471 aa13.02□□□□□ -0.33
VBP1-202ENST00000460509 PROM2Q8N271 834 aa13□□□□□ -0.33
VBP1-202ENST00000460509 PITPNM1O00562 1244 aa12.97□□□□□ -0.33
VBP1-202ENST00000460509 SSUH2Q9Y2M2 353 aa12.93□□□□□ -0.34
VBP1-202ENST00000460509 PABPN1Q86U42 306 aaKnown RBP eCLIP12.92□□□□□ -0.34
VBP1-202ENST00000460509 PIP4P2Q8N4L2 257 aa12.91□□□□□ -0.34
VBP1-202ENST00000460509 VASPP50552 380 aaPredicted RBP12.82□□□□□ -0.36
VBP1-202ENST00000460509 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
VBP1-202ENST00000460509 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
VBP1-202ENST00000460509 RTN4Q9NQC3 1192 aaKnown RBP12.81□□□□□ -0.36
VBP1-202ENST00000460509 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
VBP1-202ENST00000460509 SPDYE1Q8NFV5 336 aaPredicted RBP12.74□□□□□ -0.37
VBP1-202ENST00000460509 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
VBP1-202ENST00000460509 SP7Q8TDD2 431 aaPredicted RBP12.7□□□□□ -0.38
VBP1-202ENST00000460509 PLCD3Q8N3E9 789 aa12.67□□□□□ -0.38
VBP1-202ENST00000460509 HAX1O00165 279 aa12.66□□□□□ -0.38
VBP1-202ENST00000460509 IFNLR1Q8IU57 520 aaPredicted RBP12.66□□□□□ -0.38
VBP1-202ENST00000460509 MIER1Q8N108 512 aa12.65□□□□□ -0.38
VBP1-202ENST00000460509 KLHL34Q8N239 644 aa12.65□□□□□ -0.38
VBP1-202ENST00000460509 PRKAR2AP13861 404 aaKnown RBP12.63□□□□□ -0.39
VBP1-202ENST00000460509 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
VBP1-202ENST00000460509 EVX2Q03828 476 aa12.56□□□□□ -0.4
VBP1-202ENST00000460509 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
VBP1-202ENST00000460509 PRR29P0C7W0 189 aa12.53□□□□□ -0.4
VBP1-202ENST00000460509 SPOCK2Q92563 424 aa12.5□□□□□ -0.41
VBP1-202ENST00000460509 ZBTB47Q9UFB7 747 aaPredicted RBP12.44□□□□□ -0.42
VBP1-202ENST00000460509 C19orf67A6NJJ6 358 aa12.41□□□□□ -0.42
VBP1-202ENST00000460509 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
VBP1-202ENST00000460509 DCAF8L2P0C7V8 631 aa12.33□□□□□ -0.44
VBP1-202ENST00000460509 CIZ1Q9ULV3 898 aaPredicted RBP12.33□□□□□ -0.44
VBP1-202ENST00000460509 PKD2Q13563 968 aa12.32□□□□□ -0.44
VBP1-202ENST00000460509 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
VBP1-202ENST00000460509 ECM2O94769 699 aaPredicted RBP12.28□□□□□ -0.44
VBP1-202ENST00000460509 GABBR2O75899 941 aa12.23□□□□□ -0.45
VBP1-202ENST00000460509 CD44P16070 742 aaKnown RBP12.23□□□□□ -0.45
VBP1-202ENST00000460509 MNX1P50219 401 aaPredicted RBP12.22□□□□□ -0.45
VBP1-202ENST00000460509 DCAF8Q5TAQ9 597 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms