RNA–Protein interactions for RNA: ENST00000424964.6

TMEM248-204, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-204ENST00000424964 NISCHQ9Y2I1 1504 aa35.52■■■■□ 3.28
TMEM248-204ENST00000424964 CCDC180Q9P1Z9 1646 aa31.47■■■□□ 2.63
TMEM248-204ENST00000424964 ABCC9O60706 1549 aa30.71■■■□□ 2.51
TMEM248-204ENST00000424964 DCAF8L2P0C7V8 631 aa29.77■■■□□ 2.36
TMEM248-204ENST00000424964 ZCCHC6Q5VYS8 1495 aaKnown RBP29.6■■■□□ 2.33
TMEM248-204ENST00000424964 NACADO15069 1562 aa29.57■■■□□ 2.32
TMEM248-204ENST00000424964 RB1CC1Q8TDY2 1594 aa29.57■■■□□ 2.32
TMEM248-204ENST00000424964 MYO15BQ96JP2 1530 aa29.4■■■□□ 2.3
TMEM248-204ENST00000424964 DCAF1Q9Y4B6 1507 aa29.35■■■□□ 2.29
TMEM248-204ENST00000424964 UNC13AQ9UPW8 1703 aa28.9■■■□□ 2.22
TMEM248-204ENST00000424964 SCRIBQ14160 1630 aa28.79■■■□□ 2.2
TMEM248-204ENST00000424964 PABPN1Q86U42 306 aaKnown RBP eCLIP28.77■■■□□ 2.2
TMEM248-204ENST00000424964 BICRAQ9NZM4 1560 aa28.64■■■□□ 2.18
TMEM248-204ENST00000424964 SHROOM4Q9ULL8 1493 aa28.32■■■□□ 2.12
TMEM248-204ENST00000424964 DNAJC5BQ9UF47 199 aa28.03■■■□□ 2.08
TMEM248-204ENST00000424964 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
TMEM248-204ENST00000424964 CC2D2AQ9P2K1 1620 aa27.75■■■□□ 2.03
TMEM248-204ENST00000424964 CECR2Q9BXF3 1484 aa27.67■■■□□ 2.02
TMEM248-204ENST00000424964 SMARCA4P51532 1647 aa27.52■■■□□ 2
TMEM248-204ENST00000424964 BAZ1AQ9NRL2 1556 aaPredicted RBP27.52■■■□□ 2
TMEM248-204ENST00000424964 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.98
TMEM248-204ENST00000424964 ATAD2BQ9ULI0 1458 aa27.34■■□□□ 1.97
TMEM248-204ENST00000424964 SMARCA2P51531 1590 aa27.31■■□□□ 1.96
TMEM248-204ENST00000424964 NCAPD3P42695 1498 aa27.28■■□□□ 1.96
TMEM248-204ENST00000424964 PEG3Q9GZU2 1588 aa27.21■■□□□ 1.95
TMEM248-204ENST00000424964 HMGXB3Q12766 1538 aa27.15■■□□□ 1.94
TMEM248-204ENST00000424964 BAZ1BQ9UIG0 1483 aaKnown RBP27.14■■□□□ 1.94
TMEM248-204ENST00000424964 RSF1Q96T23 1441 aaPredicted RBP27.14■■□□□ 1.93
TMEM248-204ENST00000424964 WIZO95785 1651 aa27.12■■□□□ 1.93
TMEM248-204ENST00000424964 TOP2AP11388 1531 aaKnown RBP26.81■■□□□ 1.88
TMEM248-204ENST00000424964 SUPT5HO00267 1087 aaKnown RBP26.71■■□□□ 1.87
TMEM248-204ENST00000424964 NESP48681 1621 aa26.61■■□□□ 1.85
TMEM248-204ENST00000424964 LAMC3Q9Y6N6 1575 aa26.54■■□□□ 1.84
TMEM248-204ENST00000424964 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
TMEM248-204ENST00000424964 CCDC88BA6NC98 1476 aa26.53■■□□□ 1.84
TMEM248-204ENST00000424964 ERCC6Q03468 1493 aa26.47■■□□□ 1.83
TMEM248-204ENST00000424964 PDS5BQ9NTI5 1447 aa26.39■■□□□ 1.82
TMEM248-204ENST00000424964 CFTRP13569 1480 aa26.38■■□□□ 1.81
TMEM248-204ENST00000424964 KIF21AQ7Z4S6 1674 aa26.28■■□□□ 1.8
TMEM248-204ENST00000424964 FANCD2Q9BXW9 1451 aa26.23■■□□□ 1.79
TMEM248-204ENST00000424964 PRDM2Q13029 1718 aa26.19■■□□□ 1.78
TMEM248-204ENST00000424964 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
TMEM248-204ENST00000424964 THOC2Q8NI27 1593 aaKnown RBP26.12■■□□□ 1.77
TMEM248-204ENST00000424964 MRC2Q9UBG0 1479 aa26.09■■□□□ 1.77
TMEM248-204ENST00000424964 CUX2O14529 1486 aa26.06■■□□□ 1.76
TMEM248-204ENST00000424964 WDR62O43379 1518 aa25.97■■□□□ 1.75
TMEM248-204ENST00000424964 URB2Q14146 1524 aaKnown RBP25.93■■□□□ 1.74
TMEM248-204ENST00000424964 ABCC8Q09428 1581 aa25.83■■□□□ 1.73
TMEM248-204ENST00000424964 TOPBP1Q92547 1522 aa25.82■■□□□ 1.72
TMEM248-204ENST00000424964 DNMBPQ6XZF7 1577 aa25.79■■□□□ 1.72
TMEM248-204ENST00000424964 CUX1P39880 1505 aa25.68■■□□□ 1.7
TMEM248-204ENST00000424964 IFT140Q96RY7 1462 aa25.61■■□□□ 1.69
TMEM248-204ENST00000424964 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
TMEM248-204ENST00000424964 POLA1P09884 1462 aaPredicted RBP25.6■■□□□ 1.69
TMEM248-204ENST00000424964 FGD5Q6ZNL6 1462 aa25.58■■□□□ 1.69
TMEM248-204ENST00000424964 SOGA1O94964 1423 aa25.54■■□□□ 1.68
TMEM248-204ENST00000424964 RAD54L2Q9Y4B4 1467 aa25.52■■□□□ 1.68
TMEM248-204ENST00000424964 SYNJ1O43426 1573 aa25.51■■□□□ 1.67
TMEM248-204ENST00000424964 TOP2BQ02880 1626 aa25.5■■□□□ 1.67
TMEM248-204ENST00000424964 TARBP1Q13395 1621 aaKnown RBP25.5■■□□□ 1.67
TMEM248-204ENST00000424964 BIVM-ERCC5R4GMW8 1640 aa25.48■■□□□ 1.67
TMEM248-204ENST00000424964 ZNF608Q9ULD9 1512 aaPredicted RBP25.48■■□□□ 1.67
TMEM248-204ENST00000424964 AQRO60306 1485 aaKnown RBP eCLIP25.39■■□□□ 1.654e-6■■□□□ 13.1
TMEM248-204ENST00000424964 TDRD9Q8NDG6 1382 aaKnown RBP25.38■■□□□ 1.65
TMEM248-204ENST00000424964 EIF4G3O43432 1585 aaKnown RBP25.37■■□□□ 1.65
TMEM248-204ENST00000424964 ABCA10Q8WWZ4 1543 aa25.32■■□□□ 1.64
TMEM248-204ENST00000424964 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
TMEM248-204ENST00000424964 GAPVD1Q14C86 1478 aa25.23■■□□□ 1.63
TMEM248-204ENST00000424964 TRIM41Q8WV44 630 aa25.2■■□□□ 1.62
TMEM248-204ENST00000424964 GRIN2BQ13224 1484 aa25.2■■□□□ 1.62
TMEM248-204ENST00000424964 ABCA5Q8WWZ7 1642 aa25.19■■□□□ 1.62
TMEM248-204ENST00000424964 PBRM1Q86U86 1689 aa25.15■■□□□ 1.62
TMEM248-204ENST00000424964 SNAPC4Q5SXM2 1469 aa25.15■■□□□ 1.62
TMEM248-204ENST00000424964 FBLN2P98095 1184 aa25.13■■□□□ 1.61
TMEM248-204ENST00000424964 DNAJC5Q9H3Z4 198 aa25.11■■□□□ 1.61
TMEM248-204ENST00000424964 MAGI1Q96QZ7 1491 aaPredicted RBP25.09■■□□□ 1.61
TMEM248-204ENST00000424964 OSCARQ8IYS5 282 aa25.09■■□□□ 1.61
TMEM248-204ENST00000424964 KIF27Q86VH2 1401 aa25.06■■□□□ 1.6
TMEM248-204ENST00000424964 CHMP7Q8WUX9 453 aaPredicted RBP25.06■■□□□ 1.6
TMEM248-204ENST00000424964 CHD1O14646 1710 aa25.04■■□□□ 1.6
TMEM248-204ENST00000424964 ERICH3Q5RHP9 1530 aa25.02■■□□□ 1.6
TMEM248-204ENST00000424964 SYNJ2O15056 1496 aa25.01■■□□□ 1.59
TMEM248-204ENST00000424964 CHIC1Q5VXU3 224 aa24.98■■□□□ 1.59
TMEM248-204ENST00000424964 ADAMTS12P58397 1594 aa24.94■■□□□ 1.58
TMEM248-204ENST00000424964 FHAD1B1AJZ9 1412 aa24.94■■□□□ 1.58
TMEM248-204ENST00000424964 IGF1RP08069 1367 aa24.93■■□□□ 1.58
TMEM248-204ENST00000424964 RUSC2Q8N2Y8 1516 aa24.9■■□□□ 1.58
TMEM248-204ENST00000424964 GRIN2AQ12879 1464 aa24.86■■□□□ 1.57
TMEM248-204ENST00000424964 CUL7Q14999 1698 aa24.83■■□□□ 1.57
TMEM248-204ENST00000424964 CARMIL1Q5VZK9 1371 aa24.81■■□□□ 1.56
TMEM248-204ENST00000424964 CLASP1Q7Z460 1538 aa24.74■■□□□ 1.55
TMEM248-204ENST00000424964 CEP170Q5SW79 1584 aa24.73■■□□□ 1.55
TMEM248-204ENST00000424964 NUP160Q12769 1436 aa24.73■■□□□ 1.55
TMEM248-204ENST00000424964 FAM9AQ8IZU1 332 aaPredicted RBP24.7■■□□□ 1.54
TMEM248-204ENST00000424964 CSRNP3Q8WYN3 585 aa24.69■■□□□ 1.54
TMEM248-204ENST00000424964 EEA1Q15075 1411 aa24.69■■□□□ 1.54
TMEM248-204ENST00000424964 RAPGEF2Q9Y4G8 1499 aa24.66■■□□□ 1.54
TMEM248-204ENST00000424964 ARHGEF11O15085 1522 aa24.62■■□□□ 1.53
TMEM248-204ENST00000424964 RIMBP3CA6NJZ7 1639 aa24.61■■□□□ 1.53
TMEM248-204ENST00000424964 RIMBP3BA6NNM3 1639 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms