RNA–Protein interactions for RNA: ENST00000503078.5

DDX41-202, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 2,375 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-202ENST00000503078 NISCHQ9Y2I1 1504 aa49.65■■■■■ 5.54
DDX41-202ENST00000503078 CCDC180Q9P1Z9 1646 aa42.73■■■■■ 4.43
DDX41-202ENST00000503078 SHROOM4Q9ULL8 1493 aa42.53■■■■■ 4.4
DDX41-202ENST00000503078 ZCCHC6Q5VYS8 1495 aaKnown RBP42.08■■■■■ 4.33
DDX41-202ENST00000503078 SUPT5HO00267 1087 aaKnown RBP41.94■■■■■ 4.31
DDX41-202ENST00000503078 CHIC1Q5VXU3 224 aa41.07■■■■■ 4.17
DDX41-202ENST00000503078 MYO15BQ96JP2 1530 aa41.04■■■■■ 4.16
DDX41-202ENST00000503078 DCAF1Q9Y4B6 1507 aa40.95■■■■■ 4.15
DDX41-202ENST00000503078 DCAF8L2P0C7V8 631 aa40.9■■■■■ 4.14
DDX41-202ENST00000503078 HRCP23327 699 aa40.66■■■■■ 4.1
DDX41-202ENST00000503078 PCGF6Q9BYE7 350 aa40.25■■■■■ 4.03
DDX41-202ENST00000503078 LOC105371045A0A1W2PR82 267 aa39.82■■■■□ 3.97
DDX41-202ENST00000503078 ABCC9O60706 1549 aa39.81■■■■□ 3.96
DDX41-202ENST00000503078 PPARGC1BQ86YN6 1023 aaKnown RBP39.64■■■■□ 3.94
DDX41-202ENST00000503078 NACADO15069 1562 aa39.62■■■■□ 3.93
DDX41-202ENST00000503078 SCRIBQ14160 1630 aa39.62■■■■□ 3.93
DDX41-202ENST00000503078 TRIM26Q12899 539 aaPredicted RBP39.45■■■■□ 3.91
DDX41-202ENST00000503078 RSF1Q96T23 1441 aaPredicted RBP39.43■■■■□ 3.9
DDX41-202ENST00000503078 RB1CC1Q8TDY2 1594 aa39.11■■■■□ 3.85
DDX41-202ENST00000503078 TRIM41Q8WV44 630 aa39.08■■■■□ 3.85
DDX41-202ENST00000503078 ZEB1P37275 1124 aaPredicted RBP38.85■■■■□ 3.81
DDX41-202ENST00000503078 FAM9AQ8IZU1 332 aaPredicted RBP38.72■■■■□ 3.79
DDX41-202ENST00000503078 CECR2Q9BXF3 1484 aa38.63■■■■□ 3.77
DDX41-202ENST00000503078 MROH2BQ7Z745 1585 aa38.57■■■■□ 3.76
DDX41-202ENST00000503078 UNC13AQ9UPW8 1703 aa38.43■■■■□ 3.74
DDX41-202ENST00000503078 WIZO95785 1651 aa38.4■■■■□ 3.74
DDX41-202ENST00000503078 EHMT2Q96KQ7 1210 aa38.31■■■■□ 3.72
DDX41-202ENST00000503078 BAZ1AQ9NRL2 1556 aaPredicted RBP38.25■■■■□ 3.71
DDX41-202ENST00000503078 EIF4G1Q04637 1599 aaKnown RBP38.14■■■■□ 3.7
DDX41-202ENST00000503078 BICRAQ9NZM4 1560 aa38■■■■□ 3.67
DDX41-202ENST00000503078 SMARCA4P51532 1647 aa37.97■■■■□ 3.67
DDX41-202ENST00000503078 TOP2AP11388 1531 aaKnown RBP37.83■■■■□ 3.65
DDX41-202ENST00000503078 PABPN1Q86U42 306 aaKnown RBP eCLIP37.8■■■■□ 3.643e-7■■■■□ 23.8
DDX41-202ENST00000503078 SCAF1Q9H7N4 1312 aaKnown RBP37.72■■■■□ 3.63
DDX41-202ENST00000503078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.7■■■■□ 3.63
DDX41-202ENST00000503078 ABCC8Q09428 1581 aa37.69■■■■□ 3.62
DDX41-202ENST00000503078 CCER1Q8TC90 406 aaPredicted RBP37.67■■■■□ 3.62
DDX41-202ENST00000503078 WRNQ14191 1432 aaPredicted RBP eCLIP37.66■■■■□ 3.62
DDX41-202ENST00000503078 CCDC88BA6NC98 1476 aa37.66■■■■□ 3.62
DDX41-202ENST00000503078 SMARCA2P51531 1590 aa37.64■■■■□ 3.62
DDX41-202ENST00000503078 PELP1Q8IZL8 1130 aaKnown RBP37.62■■■■□ 3.61
DDX41-202ENST00000503078 CEP162Q5TB80 1403 aa37.52■■■■□ 3.6
DDX41-202ENST00000503078 TNIKQ9UKE5 1360 aa37.45■■■■□ 3.59
DDX41-202ENST00000503078 SOGA1O94964 1423 aa37.43■■■■□ 3.58
DDX41-202ENST00000503078 PEG3Q9GZU2 1588 aa37.41■■■■□ 3.58
DDX41-202ENST00000503078 EEA1Q15075 1411 aa37.41■■■■□ 3.58
DDX41-202ENST00000503078 CSRNP3Q8WYN3 585 aa37.28■■■■□ 3.56
DDX41-202ENST00000503078 ACIN1Q9UKV3 1341 aaKnown RBP37.25■■■■□ 3.55
DDX41-202ENST00000503078 TTBK1Q5TCY1 1321 aaPredicted RBP37.24■■■■□ 3.55
DDX41-202ENST00000503078 DIEXFQ68CQ4 756 aaKnown RBP37.21■■■■□ 3.55
DDX41-202ENST00000503078 RUSC2Q8N2Y8 1516 aa37.21■■■■□ 3.55
DDX41-202ENST00000503078 GOLGA3Q08378 1498 aa37.15■■■■□ 3.54
DDX41-202ENST00000503078 UBTFP17480 764 aaKnown RBP37.14■■■■□ 3.54
DDX41-202ENST00000503078 ATAD2BQ9ULI0 1458 aa37.14■■■■□ 3.54
DDX41-202ENST00000503078 NEUROD1Q13562 356 aa37.11■■■■□ 3.53
DDX41-202ENST00000503078 CENPBP07199 599 aaPredicted RBP36.98■■■■□ 3.51
DDX41-202ENST00000503078 BAZ1BQ9UIG0 1483 aaKnown RBP36.96■■■■□ 3.51
DDX41-202ENST00000503078 CEP164Q9UPV0 1460 aa36.89■■■■□ 3.5
DDX41-202ENST00000503078 KIF21BO75037 1637 aa36.88■■■■□ 3.49
DDX41-202ENST00000503078 ZNF316A6NFI3 1004 aaPredicted RBP36.84■■■■□ 3.49
DDX41-202ENST00000503078 SYNJ1O43426 1573 aa36.84■■■■□ 3.49
DDX41-202ENST00000503078 GTF3C3Q9Y5Q9 886 aa36.79■■■■□ 3.48
DDX41-202ENST00000503078 CLIP1P30622 1438 aa36.72■■■■□ 3.47
DDX41-202ENST00000503078 VPS8Q8N3P4 1428 aa36.65■■■■□ 3.46
DDX41-202ENST00000503078 NCAPD3P42695 1498 aa36.62■■■■□ 3.45
DDX41-202ENST00000503078 HMGXB3Q12766 1538 aa36.61■■■■□ 3.45
DDX41-202ENST00000503078 HNRNPUL2Q1KMD3 747 aaKnown RBP36.59■■■■□ 3.45
DDX41-202ENST00000503078 RAPGEF2Q9Y4G8 1499 aa36.51■■■■□ 3.44
DDX41-202ENST00000503078 APLP2Q06481 763 aa36.46■■■■□ 3.43
DDX41-202ENST00000503078 TOP2BQ02880 1626 aa36.37■■■■□ 3.41
DDX41-202ENST00000503078 MIER1Q8N108 512 aa36.33■■■■□ 3.41
DDX41-202ENST00000503078 YTHDC1Q96MU7 727 aaKnown RBP36.29■■■■□ 3.4
DDX41-202ENST00000503078 BIVM-ERCC5R4GMW8 1640 aa36.25■■■■□ 3.39
DDX41-202ENST00000503078 ERICH3Q5RHP9 1530 aa36.21■■■■□ 3.39
DDX41-202ENST00000503078 RANGAP1P46060 587 aaPredicted RBP36.2■■■■□ 3.39
DDX41-202ENST00000503078 PRXQ9BXM0 1461 aa36.14■■■■□ 3.38
DDX41-202ENST00000503078 CLSPNQ9HAW4 1339 aa36.13■■■■□ 3.37
DDX41-202ENST00000503078 CFTRP13569 1480 aa36.09■■■■□ 3.37
DDX41-202ENST00000503078 ARAP1Q96P48 1450 aa36.08■■■■□ 3.37
DDX41-202ENST00000503078 DHX57Q6P158 1386 aaKnown RBP36.03■■■■□ 3.36
DDX41-202ENST00000503078 CC2D2AQ9P2K1 1620 aa35.99■■■■□ 3.35
DDX41-202ENST00000503078 KANK4Q5T7N3 995 aaPredicted RBP35.9■■■■□ 3.34
DDX41-202ENST00000503078 CUX1P39880 1505 aa35.89■■■■□ 3.34
DDX41-202ENST00000503078 RRBP1Q9P2E9 1410 aaKnown RBP35.88■■■■□ 3.33
DDX41-202ENST00000503078 PRDM2Q13029 1718 aa35.87■■■■□ 3.33
DDX41-202ENST00000503078 MYT1Q01538 1121 aa35.85■■■■□ 3.33
DDX41-202ENST00000503078 KIF27Q86VH2 1401 aa35.85■■■■□ 3.33
DDX41-202ENST00000503078 CADPSQ9ULU8 1353 aa35.78■■■■□ 3.32
DDX41-202ENST00000503078 CUX2O14529 1486 aa35.77■■■■□ 3.32
DDX41-202ENST00000503078 ARHGAP35Q9NRY4 1499 aa35.69■■■■□ 3.3
DDX41-202ENST00000503078 CCNB3Q8WWL7 1395 aa35.67■■■■□ 3.3
DDX41-202ENST00000503078 MAP3K1Q13233 1512 aa35.44■■■■□ 3.26
DDX41-202ENST00000503078 TIAM1Q13009 1591 aa35.41■■■■□ 3.26
DDX41-202ENST00000503078 ITGAEP38570 1179 aa35.41■■■■□ 3.26
DDX41-202ENST00000503078 FANCD2Q9BXW9 1451 aa35.4■■■■□ 3.26
DDX41-202ENST00000503078 IGF1RP08069 1367 aa35.4■■■■□ 3.26
DDX41-202ENST00000503078 RAB3GAP2Q9H2M9 1393 aa35.4■■■■□ 3.26
DDX41-202ENST00000503078 SUPT16HQ9Y5B9 1047 aaKnown RBP35.37■■■■□ 3.25
DDX41-202ENST00000503078 MAPKBP1O60336 1514 aa35.36■■■■□ 3.25
DDX41-202ENST00000503078 FGD5Q6ZNL6 1462 aa35.34■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms