RNA–Protein interactions for RNA: ENST00000485790.1

SCAF4-206, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 2

Gene SCAF4, Length 1,282 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-206ENST00000485790 NISCHQ9Y2I1 1504 aa33.84■■■■□ 3.01
SCAF4-206ENST00000485790 ABCC9O60706 1549 aa30.31■■■□□ 2.44
SCAF4-206ENST00000485790 CCDC180Q9P1Z9 1646 aa30.16■■■□□ 2.42
SCAF4-206ENST00000485790 DCAF8L2P0C7V8 631 aa28.91■■■□□ 2.22
SCAF4-206ENST00000485790 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
SCAF4-206ENST00000485790 NACADO15069 1562 aa28.67■■■□□ 2.18
SCAF4-206ENST00000485790 DNAJC5BQ9UF47 199 aa28.45■■■□□ 2.14
SCAF4-206ENST00000485790 PABPN1Q86U42 306 aaKnown RBP eCLIP28.38■■■□□ 2.13
SCAF4-206ENST00000485790 MYO15BQ96JP2 1530 aa28.31■■■□□ 2.12
SCAF4-206ENST00000485790 ZCCHC6Q5VYS8 1495 aaKnown RBP28■■■□□ 2.07
SCAF4-206ENST00000485790 DCAF1Q9Y4B6 1507 aa27.95■■■□□ 2.06
SCAF4-206ENST00000485790 BICRAQ9NZM4 1560 aa27.86■■■□□ 2.05
SCAF4-206ENST00000485790 UNC13AQ9UPW8 1703 aa27.84■■■□□ 2.05
SCAF4-206ENST00000485790 SHROOM4Q9ULL8 1493 aa27.64■■■□□ 2.01
SCAF4-206ENST00000485790 SCRIBQ14160 1630 aa27.55■■■□□ 2
SCAF4-206ENST00000485790 CECR2Q9BXF3 1484 aa27.32■■□□□ 1.96
SCAF4-206ENST00000485790 CC2D2AQ9P2K1 1620 aa27.27■■□□□ 1.96
SCAF4-206ENST00000485790 EIF4G1Q04637 1599 aaKnown RBP27.25■■□□□ 1.95
SCAF4-206ENST00000485790 NCAPD3P42695 1498 aa26.55■■□□□ 1.84
SCAF4-206ENST00000485790 ATAD2BQ9ULI0 1458 aa26.42■■□□□ 1.82
SCAF4-206ENST00000485790 SMARCA2P51531 1590 aa26.34■■□□□ 1.81
SCAF4-206ENST00000485790 SMARCA4P51532 1647 aa26.28■■□□□ 1.8
SCAF4-206ENST00000485790 BAZ1AQ9NRL2 1556 aaPredicted RBP26.27■■□□□ 1.8
SCAF4-206ENST00000485790 ERCC6Q03468 1493 aa26.23■■□□□ 1.79
SCAF4-206ENST00000485790 HMGXB3Q12766 1538 aa26.21■■□□□ 1.79
SCAF4-206ENST00000485790 BAZ1BQ9UIG0 1483 aaKnown RBP26.19■■□□□ 1.78
SCAF4-206ENST00000485790 DNAJC5Q9H3Z4 198 aa26.19■■□□□ 1.78
SCAF4-206ENST00000485790 CUX2O14529 1486 aa26.11■■□□□ 1.77
SCAF4-206ENST00000485790 MROH2BQ7Z745 1585 aa26.04■■□□□ 1.76
SCAF4-206ENST00000485790 PEG3Q9GZU2 1588 aa26.04■■□□□ 1.76
SCAF4-206ENST00000485790 NESP48681 1621 aa25.99■■□□□ 1.75
SCAF4-206ENST00000485790 PDS5BQ9NTI5 1447 aa25.87■■□□□ 1.73
SCAF4-206ENST00000485790 LAMC3Q9Y6N6 1575 aa25.82■■□□□ 1.72
SCAF4-206ENST00000485790 CADPSQ9ULU8 1353 aa25.81■■□□□ 1.72
SCAF4-206ENST00000485790 WIZO95785 1651 aa25.64■■□□□ 1.69
SCAF4-206ENST00000485790 RSF1Q96T23 1441 aaPredicted RBP25.63■■□□□ 1.69
SCAF4-206ENST00000485790 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
SCAF4-206ENST00000485790 MRC2Q9UBG0 1479 aa25.51■■□□□ 1.67
SCAF4-206ENST00000485790 KIF21AQ7Z4S6 1674 aa25.47■■□□□ 1.67
SCAF4-206ENST00000485790 CFTRP13569 1480 aa25.43■■□□□ 1.66
SCAF4-206ENST00000485790 CEP164Q9UPV0 1460 aa25.43■■□□□ 1.66
SCAF4-206ENST00000485790 FANCD2Q9BXW9 1451 aa25.41■■□□□ 1.66
SCAF4-206ENST00000485790 TOP2AP11388 1531 aaKnown RBP25.4■■□□□ 1.66
SCAF4-206ENST00000485790 WDR62O43379 1518 aa25.35■■□□□ 1.65
SCAF4-206ENST00000485790 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
SCAF4-206ENST00000485790 OSCARQ8IYS5 282 aa25.18■■□□□ 1.62
SCAF4-206ENST00000485790 URB2Q14146 1524 aaKnown RBP25.12■■□□□ 1.61
SCAF4-206ENST00000485790 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
SCAF4-206ENST00000485790 ABCC8Q09428 1581 aa24.99■■□□□ 1.59
SCAF4-206ENST00000485790 IFT140Q96RY7 1462 aa24.96■■□□□ 1.59
SCAF4-206ENST00000485790 TOPBP1Q92547 1522 aa24.89■■□□□ 1.57
SCAF4-206ENST00000485790 ZNF608Q9ULD9 1512 aaPredicted RBP24.82■■□□□ 1.56
SCAF4-206ENST00000485790 PRDM2Q13029 1718 aa24.82■■□□□ 1.56
SCAF4-206ENST00000485790 DNMBPQ6XZF7 1577 aa24.76■■□□□ 1.55
SCAF4-206ENST00000485790 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
SCAF4-206ENST00000485790 FBLN2P98095 1184 aa24.73■■□□□ 1.55
SCAF4-206ENST00000485790 AQRO60306 1485 aaKnown RBP eCLIP24.7■■□□□ 1.552e-7■■■□□ 18.2
SCAF4-206ENST00000485790 SOGA1O94964 1423 aa24.69■■□□□ 1.54
SCAF4-206ENST00000485790 POLA1P09884 1462 aaPredicted RBP24.64■■□□□ 1.54
SCAF4-206ENST00000485790 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
SCAF4-206ENST00000485790 RAD54L2Q9Y4B4 1467 aa24.58■■□□□ 1.53
SCAF4-206ENST00000485790 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
SCAF4-206ENST00000485790 EIF4G3O43432 1585 aaKnown RBP24.56■■□□□ 1.52
SCAF4-206ENST00000485790 CHMP7Q8WUX9 453 aaPredicted RBP24.56■■□□□ 1.52
SCAF4-206ENST00000485790 CYB5RLQ6IPT4 315 aa24.55■■□□□ 1.52
SCAF4-206ENST00000485790 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
SCAF4-206ENST00000485790 ARHGEF11O15085 1522 aa24.46■■□□□ 1.51
SCAF4-206ENST00000485790 RIMBP3CA6NJZ7 1639 aa24.45■■□□□ 1.5
SCAF4-206ENST00000485790 RIMBP3BA6NNM3 1639 aa24.45■■□□□ 1.5
SCAF4-206ENST00000485790 RIMBP3Q9UFD9 1639 aa24.45■■□□□ 1.5
SCAF4-206ENST00000485790 CUX1P39880 1505 aa24.45■■□□□ 1.5
SCAF4-206ENST00000485790 GRIN2BQ13224 1484 aa24.4■■□□□ 1.5
SCAF4-206ENST00000485790 WDR97A6NE52 1622 aa24.38■■□□□ 1.49
SCAF4-206ENST00000485790 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
SCAF4-206ENST00000485790 MAGI1Q96QZ7 1491 aaPredicted RBP24.35■■□□□ 1.49
SCAF4-206ENST00000485790 GAPVD1Q14C86 1478 aa24.32■■□□□ 1.48
SCAF4-206ENST00000485790 WRNQ14191 1432 aaPredicted RBP eCLIP24.3■■□□□ 1.481e-8■■■■■ 41.8
SCAF4-206ENST00000485790 TRHP20396 242 aaPredicted RBP24.3■■□□□ 1.48
SCAF4-206ENST00000485790 CHD1O14646 1710 aa24.29■■□□□ 1.48
SCAF4-206ENST00000485790 SYNJ2O15056 1496 aa24.28■■□□□ 1.48
SCAF4-206ENST00000485790 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
SCAF4-206ENST00000485790 SYNJ1O43426 1573 aa24.22■■□□□ 1.47
SCAF4-206ENST00000485790 ARAP1Q96P48 1450 aa24.21■■□□□ 1.47
SCAF4-206ENST00000485790 CLASP1Q7Z460 1538 aa24.13■■□□□ 1.45
SCAF4-206ENST00000485790 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
SCAF4-206ENST00000485790 ABCA5Q8WWZ7 1642 aa24.05■■□□□ 1.44
SCAF4-206ENST00000485790 FHAD1B1AJZ9 1412 aa24.04■■□□□ 1.44
SCAF4-206ENST00000485790 GRIN2AQ12879 1464 aa24.03■■□□□ 1.44
SCAF4-206ENST00000485790 PBRM1Q86U86 1689 aa24.01■■□□□ 1.43
SCAF4-206ENST00000485790 BIVM-ERCC5R4GMW8 1640 aa23.98■■□□□ 1.43
SCAF4-206ENST00000485790 NUP160Q12769 1436 aa23.94■■□□□ 1.42
SCAF4-206ENST00000485790 ERICH3Q5RHP9 1530 aa23.94■■□□□ 1.42
SCAF4-206ENST00000485790 JPH4Q96JJ6 628 aa23.93■■□□□ 1.42
SCAF4-206ENST00000485790 ADAMTS12P58397 1594 aa23.88■■□□□ 1.41
SCAF4-206ENST00000485790 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
SCAF4-206ENST00000485790 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
SCAF4-206ENST00000485790 IGF1RP08069 1367 aa23.8■■□□□ 1.4
SCAF4-206ENST00000485790 PRG4Q92954 1404 aaPredicted RBP23.8■■□□□ 1.4
SCAF4-206ENST00000485790 NPM1P06748 294 aaKnown RBP eCLIP23.79■■□□□ 1.4
SCAF4-206ENST00000485790 ERCC6L2Q5T890 1561 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms