RNA–Protein interactions for RNA: ENST00000477538.1

VHL-203, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best)

Gene VHL, Length 958 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-203ENST00000477538 NISCHQ9Y2I1 1504 aa38.32■■■■□ 3.72
VHL-203ENST00000477538 CCDC180Q9P1Z9 1646 aa33.92■■■■□ 3.02
VHL-203ENST00000477538 ABCC9O60706 1549 aa32.51■■■□□ 2.79
VHL-203ENST00000477538 ZCCHC6Q5VYS8 1495 aaKnown RBP32.05■■■□□ 2.72
VHL-203ENST00000477538 DCAF1Q9Y4B6 1507 aa31.73■■■□□ 2.67
VHL-203ENST00000477538 DCAF8L2P0C7V8 631 aa31.71■■■□□ 2.67
VHL-203ENST00000477538 NACADO15069 1562 aa31.66■■■□□ 2.66
VHL-203ENST00000477538 MYO15BQ96JP2 1530 aa31.63■■■□□ 2.65
VHL-203ENST00000477538 RB1CC1Q8TDY2 1594 aa31.57■■■□□ 2.64
VHL-203ENST00000477538 UNC13AQ9UPW8 1703 aa31.05■■■□□ 2.56
VHL-203ENST00000477538 SCRIBQ14160 1630 aa30.97■■■□□ 2.55
VHL-203ENST00000477538 SHROOM4Q9ULL8 1493 aa30.61■■■□□ 2.49
VHL-203ENST00000477538 BICRAQ9NZM4 1560 aa30.6■■■□□ 2.49
VHL-203ENST00000477538 PABPN1Q86U42 306 aaKnown RBP eCLIP30.41■■■□□ 2.46
VHL-203ENST00000477538 CECR2Q9BXF3 1484 aa29.76■■■□□ 2.35
VHL-203ENST00000477538 EIF4G1Q04637 1599 aaKnown RBP29.73■■■□□ 2.35
VHL-203ENST00000477538 BAZ1AQ9NRL2 1556 aaPredicted RBP29.68■■■□□ 2.34
VHL-203ENST00000477538 SMARCA4P51532 1647 aa29.67■■■□□ 2.34
VHL-203ENST00000477538 MROH2BQ7Z745 1585 aa29.55■■■□□ 2.32
VHL-203ENST00000477538 CC2D2AQ9P2K1 1620 aa29.49■■■□□ 2.31
VHL-203ENST00000477538 RSF1Q96T23 1441 aaPredicted RBP29.38■■■□□ 2.29
VHL-203ENST00000477538 PEG3Q9GZU2 1588 aa29.34■■■□□ 2.29
VHL-203ENST00000477538 WIZO95785 1651 aa29.34■■■□□ 2.29
VHL-203ENST00000477538 SMARCA2P51531 1590 aa29.31■■■□□ 2.28
VHL-203ENST00000477538 ATAD2BQ9ULI0 1458 aa29.27■■■□□ 2.28
VHL-203ENST00000477538 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
VHL-203ENST00000477538 NCAPD3P42695 1498 aa29.15■■■□□ 2.26
VHL-203ENST00000477538 HMGXB3Q12766 1538 aa29.13■■■□□ 2.25
VHL-203ENST00000477538 BAZ1BQ9UIG0 1483 aaKnown RBP29.1■■■□□ 2.25
VHL-203ENST00000477538 SUPT5HO00267 1087 aaKnown RBP29.07■■■□□ 2.24
VHL-203ENST00000477538 TOP2AP11388 1531 aaKnown RBP29.01■■■□□ 2.23
VHL-203ENST00000477538 CCDC88BA6NC98 1476 aa28.62■■■□□ 2.17
VHL-203ENST00000477538 PRDM2Q13029 1718 aa28.39■■■□□ 2.14
VHL-203ENST00000477538 LAMC3Q9Y6N6 1575 aa28.37■■■□□ 2.13
VHL-203ENST00000477538 CADPSQ9ULU8 1353 aa28.32■■■□□ 2.12
VHL-203ENST00000477538 NESP48681 1621 aa28.32■■■□□ 2.12
VHL-203ENST00000477538 CFTRP13569 1480 aa28.3■■■□□ 2.12
VHL-203ENST00000477538 KIF21AQ7Z4S6 1674 aa28.13■■■□□ 2.09
VHL-203ENST00000477538 PDS5BQ9NTI5 1447 aa28.08■■■□□ 2.09
VHL-203ENST00000477538 FANCD2Q9BXW9 1451 aa28.03■■■□□ 2.08
VHL-203ENST00000477538 ERCC6Q03468 1493 aa27.97■■■□□ 2.07
VHL-203ENST00000477538 CEP164Q9UPV0 1460 aa27.96■■■□□ 2.07
VHL-203ENST00000477538 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
VHL-203ENST00000477538 ABCC8Q09428 1581 aa27.82■■■□□ 2.04
VHL-203ENST00000477538 MRC2Q9UBG0 1479 aa27.79■■■□□ 2.04
VHL-203ENST00000477538 URB2Q14146 1524 aaKnown RBP27.73■■■□□ 2.03
VHL-203ENST00000477538 DNMBPQ6XZF7 1577 aa27.73■■■□□ 2.03
VHL-203ENST00000477538 WDR62O43379 1518 aa27.71■■■□□ 2.03
VHL-203ENST00000477538 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.03
VHL-203ENST00000477538 CUX1P39880 1505 aa27.69■■■□□ 2.02
VHL-203ENST00000477538 BIVM-ERCC5R4GMW8 1640 aa27.68■■■□□ 2.02
VHL-203ENST00000477538 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
VHL-203ENST00000477538 SYNJ1O43426 1573 aa27.67■■■□□ 2.02
VHL-203ENST00000477538 TOP2BQ02880 1626 aa27.64■■■□□ 2.02
VHL-203ENST00000477538 FGD5Q6ZNL6 1462 aa27.5■■□□□ 1.99
VHL-203ENST00000477538 POLA1P09884 1462 aaPredicted RBP27.46■■□□□ 1.99
VHL-203ENST00000477538 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
VHL-203ENST00000477538 CUX2O14529 1486 aa27.45■■□□□ 1.99
VHL-203ENST00000477538 TRIM41Q8WV44 630 aa27.41■■□□□ 1.98
VHL-203ENST00000477538 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
VHL-203ENST00000477538 TARBP1Q13395 1621 aaKnown RBP27.37■■□□□ 1.97
VHL-203ENST00000477538 SOGA1O94964 1423 aa27.33■■□□□ 1.97
VHL-203ENST00000477538 RAD54L2Q9Y4B4 1467 aa27.33■■□□□ 1.97
VHL-203ENST00000477538 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
VHL-203ENST00000477538 ABCA10Q8WWZ4 1543 aa27.25■■□□□ 1.95
VHL-203ENST00000477538 EIF4G3O43432 1585 aaKnown RBP27.17■■□□□ 1.94
VHL-203ENST00000477538 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
VHL-203ENST00000477538 ZNF608Q9ULD9 1512 aaPredicted RBP27.16■■□□□ 1.94
VHL-203ENST00000477538 PBRM1Q86U86 1689 aa27.13■■□□□ 1.93
VHL-203ENST00000477538 TDRD9Q8NDG6 1382 aaKnown RBP27.09■■□□□ 1.93
VHL-203ENST00000477538 KIF27Q86VH2 1401 aa27.07■■□□□ 1.92
VHL-203ENST00000477538 AQRO60306 1485 aaKnown RBP eCLIP27.06■■□□□ 1.92
VHL-203ENST00000477538 GAPVD1Q14C86 1478 aa27.06■■□□□ 1.92
VHL-203ENST00000477538 RUSC2Q8N2Y8 1516 aa27.02■■□□□ 1.92
VHL-203ENST00000477538 GRIN2BQ13224 1484 aa26.96■■□□□ 1.91
VHL-203ENST00000477538 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
VHL-203ENST00000477538 EEA1Q15075 1411 aa26.95■■□□□ 1.9
VHL-203ENST00000477538 CUL7Q14999 1698 aa26.89■■□□□ 1.9
VHL-203ENST00000477538 SNAPC4Q5SXM2 1469 aa26.87■■□□□ 1.89
VHL-203ENST00000477538 ADAMTS12P58397 1594 aa26.85■■□□□ 1.89
VHL-203ENST00000477538 FAM9AQ8IZU1 332 aaPredicted RBP26.85■■□□□ 1.89
VHL-203ENST00000477538 IGF1RP08069 1367 aa26.84■■□□□ 1.89
VHL-203ENST00000477538 MAGI1Q96QZ7 1491 aaPredicted RBP26.84■■□□□ 1.89
VHL-203ENST00000477538 CHD1O14646 1710 aa26.79■■□□□ 1.88
VHL-203ENST00000477538 CSRNP3Q8WYN3 585 aa26.78■■□□□ 1.88
VHL-203ENST00000477538 FHAD1B1AJZ9 1412 aa26.74■■□□□ 1.87
VHL-203ENST00000477538 CARMIL1Q5VZK9 1371 aa26.72■■□□□ 1.87
VHL-203ENST00000477538 SYNJ2O15056 1496 aa26.72■■□□□ 1.87
VHL-203ENST00000477538 KIF21BO75037 1637 aa26.71■■□□□ 1.87
VHL-203ENST00000477538 PRXQ9BXM0 1461 aa26.69■■□□□ 1.86
VHL-203ENST00000477538 RAPGEF2Q9Y4G8 1499 aa26.66■■□□□ 1.86
VHL-203ENST00000477538 GRIN2AQ12879 1464 aa26.63■■□□□ 1.85
VHL-203ENST00000477538 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
VHL-203ENST00000477538 FBLN2P98095 1184 aa26.6■■□□□ 1.85
VHL-203ENST00000477538 CTTNBP2Q8WZ74 1663 aa26.56■■□□□ 1.84
VHL-203ENST00000477538 GOLGA3Q08378 1498 aa26.54■■□□□ 1.84
VHL-203ENST00000477538 CEP170Q5SW79 1584 aa26.52■■□□□ 1.84
VHL-203ENST00000477538 EHMT2Q96KQ7 1210 aa26.47■■□□□ 1.83
VHL-203ENST00000477538 NUP160Q12769 1436 aa26.47■■□□□ 1.83
VHL-203ENST00000477538 CLASP1Q7Z460 1538 aa26.39■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 355.9 ms