Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 AC018892.3-201ENST00000623986 2499 ntBASIC15.26■□□□□ 0.03
TRIM38O00635 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM38O00635 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM38O00635 AC026954.1-201ENST00000429771 1293 ntBASIC15.26■□□□□ 0.03
TRIM38O00635 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 KRT18P43-201ENST00000469825 1281 ntBASIC15.26■□□□□ 0.03
TRIM38O00635 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM38O00635 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM38O00635 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM38O00635 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.26■□□□□ 0.03
TRIM38O00635 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
TRIM38O00635 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRIM38O00635 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.26■□□□□ 0.03
TRIM38O00635 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM38O00635 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRIM38O00635 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRIM38O00635 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRIM38O00635 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM38O00635 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM38O00635 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM38O00635 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM38O00635 AC245100.3-201ENST00000441281 285 ntBASIC15.25■□□□□ 0.03
TRIM38O00635 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM38O00635 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM38O00635 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM38O00635 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.25■□□□□ 0.03
TRIM38O00635 AC026410.3-201ENST00000514280 936 ntBASIC15.25■□□□□ 0.03
TRIM38O00635 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM38O00635 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRIM38O00635 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM38O00635 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM38O00635 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRIM38O00635 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM38O00635 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM38O00635 AC020907.1-201ENST00000616460 1350 ntBASIC15.24■□□□□ 0.03
TRIM38O00635 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM38O00635 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM38O00635 CICP4-201ENST00000447359 2812 ntBASIC15.24■□□□□ 0.03
TRIM38O00635 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.24■□□□□ 0.03
TRIM38O00635 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
TRIM38O00635 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.24■□□□□ 0.03
TRIM38O00635 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.24■□□□□ 0.03
TRIM38O00635 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM38O00635 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms