RNA–Protein interactions for RNA: ENST00000368297.5

LMNA-203, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 1,679 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-203ENST00000368297 NISCHQ9Y2I1 1504 aa36.76■■■■□ 3.48
LMNA-203ENST00000368297 CCDC180Q9P1Z9 1646 aa32.29■■■□□ 2.76
LMNA-203ENST00000368297 ABCC9O60706 1549 aa30.84■■■□□ 2.53
LMNA-203ENST00000368297 ZCCHC6Q5VYS8 1495 aaKnown RBP30.8■■■□□ 2.52
LMNA-203ENST00000368297 DCAF8L2P0C7V8 631 aa30.52■■■□□ 2.48
LMNA-203ENST00000368297 DCAF1Q9Y4B6 1507 aa30.39■■■□□ 2.46
LMNA-203ENST00000368297 MYO15BQ96JP2 1530 aa30.17■■■□□ 2.42
LMNA-203ENST00000368297 NACADO15069 1562 aa30.14■■■□□ 2.42
LMNA-203ENST00000368297 RB1CC1Q8TDY2 1594 aa29.99■■■□□ 2.39
LMNA-203ENST00000368297 SHROOM4Q9ULL8 1493 aa29.74■■■□□ 2.35
LMNA-203ENST00000368297 SCRIBQ14160 1630 aa29.63■■■□□ 2.33
LMNA-203ENST00000368297 UNC13AQ9UPW8 1703 aa29.36■■■□□ 2.29
LMNA-203ENST00000368297 BICRAQ9NZM4 1560 aa29.04■■■□□ 2.24
LMNA-203ENST00000368297 PABPN1Q86U42 306 aaKnown RBP eCLIP28.99■■■□□ 2.23
LMNA-203ENST00000368297 CECR2Q9BXF3 1484 aa28.58■■■□□ 2.17
LMNA-203ENST00000368297 BAZ1AQ9NRL2 1556 aaPredicted RBP28.44■■■□□ 2.14
LMNA-203ENST00000368297 SUPT5HO00267 1087 aaKnown RBP28.43■■■□□ 2.14
LMNA-203ENST00000368297 MROH2BQ7Z745 1585 aa28.38■■■□□ 2.13
LMNA-203ENST00000368297 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
LMNA-203ENST00000368297 RSF1Q96T23 1441 aaPredicted RBP28.35■■■□□ 2.13
LMNA-203ENST00000368297 EIF4G1Q04637 1599 aaKnown RBP28.22■■■□□ 2.11
LMNA-203ENST00000368297 WIZO95785 1651 aa28.15■■■□□ 2.1
LMNA-203ENST00000368297 PEG3Q9GZU2 1588 aa28■■■□□ 2.07
LMNA-203ENST00000368297 SMARCA2P51531 1590 aa27.97■■■□□ 2.07
LMNA-203ENST00000368297 ATAD2BQ9ULI0 1458 aa27.96■■■□□ 2.07
LMNA-203ENST00000368297 CC2D2AQ9P2K1 1620 aa27.9■■■□□ 2.06
LMNA-203ENST00000368297 TOP2AP11388 1531 aaKnown RBP27.86■■■□□ 2.05
LMNA-203ENST00000368297 BAZ1BQ9UIG0 1483 aaKnown RBP27.82■■■□□ 2.04
LMNA-203ENST00000368297 NCAPD3P42695 1498 aa27.78■■■□□ 2.04
LMNA-203ENST00000368297 HMGXB3Q12766 1538 aa27.74■■■□□ 2.03
LMNA-203ENST00000368297 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
LMNA-203ENST00000368297 DNAJC5BQ9UF47 199 aa27.46■■□□□ 1.99
LMNA-203ENST00000368297 CFTRP13569 1480 aa27.06■■□□□ 1.92
LMNA-203ENST00000368297 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
LMNA-203ENST00000368297 PRDM2Q13029 1718 aa26.98■■□□□ 1.91
LMNA-203ENST00000368297 CHIC1Q5VXU3 224 aa26.98■■□□□ 1.91
LMNA-203ENST00000368297 LAMC3Q9Y6N6 1575 aa26.94■■□□□ 1.9
LMNA-203ENST00000368297 NESP48681 1621 aa26.94■■□□□ 1.9
LMNA-203ENST00000368297 ABCC8Q09428 1581 aa26.85■■□□□ 1.89
LMNA-203ENST00000368297 FANCD2Q9BXW9 1451 aa26.77■■□□□ 1.88
LMNA-203ENST00000368297 TRIM41Q8WV44 630 aa26.76■■□□□ 1.87
LMNA-203ENST00000368297 PDS5BQ9NTI5 1447 aa26.74■■□□□ 1.87
LMNA-203ENST00000368297 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.875e-6■■■■□ 20.9
LMNA-203ENST00000368297 CEP164Q9UPV0 1460 aa26.66■■□□□ 1.86
LMNA-203ENST00000368297 KIF21AQ7Z4S6 1674 aa26.65■■□□□ 1.86
LMNA-203ENST00000368297 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
LMNA-203ENST00000368297 CUX1P39880 1505 aa26.56■■□□□ 1.84
LMNA-203ENST00000368297 TOP2BQ02880 1626 aa26.56■■□□□ 1.84
LMNA-203ENST00000368297 BIVM-ERCC5R4GMW8 1640 aa26.55■■□□□ 1.84
LMNA-203ENST00000368297 ERCC6Q03468 1493 aa26.52■■□□□ 1.84
LMNA-203ENST00000368297 DNMBPQ6XZF7 1577 aa26.48■■□□□ 1.83
LMNA-203ENST00000368297 URB2Q14146 1524 aaKnown RBP26.44■■□□□ 1.82
LMNA-203ENST00000368297 TOPBP1Q92547 1522 aa26.44■■□□□ 1.82
LMNA-203ENST00000368297 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
LMNA-203ENST00000368297 FGD5Q6ZNL6 1462 aa26.35■■□□□ 1.81
LMNA-203ENST00000368297 THOC2Q8NI27 1593 aaKnown RBP26.29■■□□□ 1.8
LMNA-203ENST00000368297 WDR62O43379 1518 aa26.28■■□□□ 1.8
LMNA-203ENST00000368297 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
LMNA-203ENST00000368297 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
LMNA-203ENST00000368297 SOGA1O94964 1423 aa26.25■■□□□ 1.79
LMNA-203ENST00000368297 RAD54L2Q9Y4B4 1467 aa26.18■■□□□ 1.78
LMNA-203ENST00000368297 RUSC2Q8N2Y8 1516 aa26.17■■□□□ 1.78
LMNA-203ENST00000368297 EEA1Q15075 1411 aa26.16■■□□□ 1.78
LMNA-203ENST00000368297 CUX2O14529 1486 aa26.12■■□□□ 1.77
LMNA-203ENST00000368297 ABCA10Q8WWZ4 1543 aa26.1■■□□□ 1.77
LMNA-203ENST00000368297 KIF27Q86VH2 1401 aa26.1■■□□□ 1.77
LMNA-203ENST00000368297 WDR97A6NE52 1622 aa26.08■■□□□ 1.76
LMNA-203ENST00000368297 TARBP1Q13395 1621 aaKnown RBP26.06■■□□□ 1.76
LMNA-203ENST00000368297 IFT140Q96RY7 1462 aa26.04■■□□□ 1.76
LMNA-203ENST00000368297 CSRNP3Q8WYN3 585 aa26.03■■□□□ 1.76
LMNA-203ENST00000368297 TDRD9Q8NDG6 1382 aaKnown RBP25.96■■□□□ 1.75
LMNA-203ENST00000368297 ABCA5Q8WWZ7 1642 aa25.93■■□□□ 1.74
LMNA-203ENST00000368297 LOC105371045A0A1W2PR82 267 aa25.93■■□□□ 1.74
LMNA-203ENST00000368297 EHMT2Q96KQ7 1210 aa25.92■■□□□ 1.74
LMNA-203ENST00000368297 GAPVD1Q14C86 1478 aa25.9■■□□□ 1.74
LMNA-203ENST00000368297 ZNF608Q9ULD9 1512 aaPredicted RBP25.88■■□□□ 1.73
LMNA-203ENST00000368297 IGF1RP08069 1367 aa25.86■■□□□ 1.73
LMNA-203ENST00000368297 AQRO60306 1485 aaKnown RBP eCLIP25.86■■□□□ 1.732e-7■■■■■ 36.3
LMNA-203ENST00000368297 KIF21BO75037 1637 aa25.85■■□□□ 1.73
LMNA-203ENST00000368297 EIF4G3O43432 1585 aaKnown RBP25.83■■□□□ 1.72
LMNA-203ENST00000368297 PBRM1Q86U86 1689 aa25.82■■□□□ 1.72
LMNA-203ENST00000368297 ERICH3Q5RHP9 1530 aa25.8■■□□□ 1.72
LMNA-203ENST00000368297 GOLGA3Q08378 1498 aa25.79■■□□□ 1.72
LMNA-203ENST00000368297 PRXQ9BXM0 1461 aa25.79■■□□□ 1.72
LMNA-203ENST00000368297 CUL7Q14999 1698 aa25.77■■□□□ 1.72
LMNA-203ENST00000368297 GRIN2BQ13224 1484 aa25.76■■□□□ 1.71
LMNA-203ENST00000368297 CARMIL1Q5VZK9 1371 aa25.75■■□□□ 1.71
LMNA-203ENST00000368297 RAPGEF2Q9Y4G8 1499 aa25.73■■□□□ 1.71
LMNA-203ENST00000368297 UBTFP17480 764 aaKnown RBP25.71■■□□□ 1.71
LMNA-203ENST00000368297 ADAMTS12P58397 1594 aa25.64■■□□□ 1.7
LMNA-203ENST00000368297 SNAPC4Q5SXM2 1469 aa25.64■■□□□ 1.69
LMNA-203ENST00000368297 FHAD1B1AJZ9 1412 aa25.61■■□□□ 1.69
LMNA-203ENST00000368297 TNIKQ9UKE5 1360 aa25.6■■□□□ 1.69
LMNA-203ENST00000368297 MAGI1Q96QZ7 1491 aaPredicted RBP25.58■■□□□ 1.69
LMNA-203ENST00000368297 SYNJ2O15056 1496 aa25.48■■□□□ 1.67
LMNA-203ENST00000368297 CHMP7Q8WUX9 453 aaPredicted RBP25.45■■□□□ 1.67
LMNA-203ENST00000368297 CEP162Q5TB80 1403 aa25.45■■□□□ 1.66
LMNA-203ENST00000368297 FBLN2P98095 1184 aa25.45■■□□□ 1.66
LMNA-203ENST00000368297 CTTNBP2Q8WZ74 1663 aa25.44■■□□□ 1.66
LMNA-203ENST00000368297 GRIN2AQ12879 1464 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms