RNA–Protein interactions for RNA: ENST00000382099.2

VLDLR-202, Transcript of very low density lipoprotein receptor, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VLDLR, Length 3,240 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VLDLR-202ENST00000382099 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
VLDLR-202ENST00000382099 PELP1Q8IZL8 1130 aaKnown RBP25.78■■□□□ 1.72
VLDLR-202ENST00000382099 HRCP23327 699 aa25.52■■□□□ 1.68
VLDLR-202ENST00000382099 PPARGC1BQ86YN6 1023 aaKnown RBP25.24■■□□□ 1.63
VLDLR-202ENST00000382099 MYT1Q01538 1121 aa24.99■■□□□ 1.59
VLDLR-202ENST00000382099 PCGF6Q9BYE7 350 aa24.92■■□□□ 1.58
VLDLR-202ENST00000382099 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
VLDLR-202ENST00000382099 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
VLDLR-202ENST00000382099 SUPT5HO00267 1087 aaKnown RBP24.14■■□□□ 1.45
VLDLR-202ENST00000382099 DCAF8L2P0C7V8 631 aa23.97■■□□□ 1.43
VLDLR-202ENST00000382099 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
VLDLR-202ENST00000382099 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
VLDLR-202ENST00000382099 MYO15BQ96JP2 1530 aa23.81■■□□□ 1.4
VLDLR-202ENST00000382099 NEUROD1Q13562 356 aa23.77■■□□□ 1.4
VLDLR-202ENST00000382099 ZEB1P37275 1124 aaPredicted RBP23.68■■□□□ 1.38
VLDLR-202ENST00000382099 TRIM26Q12899 539 aaPredicted RBP23.64■■□□□ 1.37
VLDLR-202ENST00000382099 CHIC1Q5VXU3 224 aa23.63■■□□□ 1.37
VLDLR-202ENST00000382099 CENPBP07199 599 aaPredicted RBP23.54■■□□□ 1.36
VLDLR-202ENST00000382099 TTBK1Q5TCY1 1321 aaPredicted RBP23.53■■□□□ 1.36
VLDLR-202ENST00000382099 ZCCHC6Q5VYS8 1495 aaKnown RBP23.49■■□□□ 1.35
VLDLR-202ENST00000382099 BCL11AQ9H165 835 aa23.48■■□□□ 1.35
VLDLR-202ENST00000382099 LOC105371045A0A1W2PR82 267 aa23.43■■□□□ 1.34
VLDLR-202ENST00000382099 DCAF1Q9Y4B6 1507 aa23.34■■□□□ 1.33
VLDLR-202ENST00000382099 CCDC180Q9P1Z9 1646 aa23.3■■□□□ 1.32
VLDLR-202ENST00000382099 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
VLDLR-202ENST00000382099 YTHDC1Q96MU7 727 aaKnown RBP23.13■■□□□ 1.29
VLDLR-202ENST00000382099 PRKCSHP14314 528 aaPredicted RBP23.09■■□□□ 1.29
VLDLR-202ENST00000382099 DIEXFQ68CQ4 756 aaKnown RBP23.08■■□□□ 1.29
VLDLR-202ENST00000382099 ANP32EQ9BTT0 268 aa22.9■■□□□ 1.26
VLDLR-202ENST00000382099 CCER1Q8TC90 406 aaPredicted RBP22.83■■□□□ 1.24
VLDLR-202ENST00000382099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.81■■□□□ 1.24
VLDLR-202ENST00000382099 EHMT2Q96KQ7 1210 aa22.78■■□□□ 1.24
VLDLR-202ENST00000382099 CSRNP3Q8WYN3 585 aa22.76■■□□□ 1.23
VLDLR-202ENST00000382099 ERICH6Q7L0X2 663 aa22.53■■□□□ 1.2
VLDLR-202ENST00000382099 TSHZ2Q9NRE2 1034 aa22.44■■□□□ 1.18
VLDLR-202ENST00000382099 MIER1Q8N108 512 aa22.39■■□□□ 1.18
VLDLR-202ENST00000382099 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
VLDLR-202ENST00000382099 ZNF316A6NFI3 1004 aaPredicted RBP22.35■■□□□ 1.17
VLDLR-202ENST00000382099 SUPT16HQ9Y5B9 1047 aaKnown RBP22.33■■□□□ 1.17
VLDLR-202ENST00000382099 ABCC9O60706 1549 aa22.24■■□□□ 1.15
VLDLR-202ENST00000382099 BCANQ96GW7 911 aa22.14■■□□□ 1.13
VLDLR-202ENST00000382099 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.13
VLDLR-202ENST00000382099 APLP2Q06481 763 aa22.06■■□□□ 1.12
VLDLR-202ENST00000382099 SCRIBQ14160 1630 aa22.05■■□□□ 1.12
VLDLR-202ENST00000382099 ANO8Q9HCE9 1232 aaPredicted RBP22.02■■□□□ 1.12
VLDLR-202ENST00000382099 CLSPNQ9HAW4 1339 aa21.99■■□□□ 1.11
VLDLR-202ENST00000382099 RB1CC1Q8TDY2 1594 aa21.96■■□□□ 1.11
VLDLR-202ENST00000382099 RBM19Q9Y4C8 960 aaKnown RBP21.89■■□□□ 1.1
VLDLR-202ENST00000382099 FKBP8Q14318 412 aa21.76■■□□□ 1.07
VLDLR-202ENST00000382099 CCDC136Q96JN2 1154 aa21.75■■□□□ 1.07
VLDLR-202ENST00000382099 ITGAEP38570 1179 aa21.7■■□□□ 1.07
VLDLR-202ENST00000382099 MSH5O43196 834 aa21.7■■□□□ 1.06
VLDLR-202ENST00000382099 DEKP35659 375 aaKnown RBP21.7■■□□□ 1.06
VLDLR-202ENST00000382099 SALL2Q9Y467 1007 aaPredicted RBP21.68■■□□□ 1.06
VLDLR-202ENST00000382099 CECR2Q9BXF3 1484 aa21.68■■□□□ 1.06
VLDLR-202ENST00000382099 MROH2BQ7Z745 1585 aa21.62■■□□□ 1.05
VLDLR-202ENST00000382099 NEFLP07196 543 aa21.61■■□□□ 1.05
VLDLR-202ENST00000382099 WIZO95785 1651 aa21.54■■□□□ 1.04
VLDLR-202ENST00000382099 HNRNPUL2Q1KMD3 747 aaKnown RBP21.53■■□□□ 1.04
VLDLR-202ENST00000382099 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.52■■□□□ 1.04
VLDLR-202ENST00000382099 RTN4Q9NQC3 1192 aaKnown RBP21.48■■□□□ 1.03
VLDLR-202ENST00000382099 MYT1LQ9UL68 1186 aa21.47■■□□□ 1.03
VLDLR-202ENST00000382099 NBR1Q14596 966 aa21.46■■□□□ 1.03
VLDLR-202ENST00000382099 NACADO15069 1562 aa21.45■■□□□ 1.02
VLDLR-202ENST00000382099 KCNH8Q96L42 1107 aa21.41■■□□□ 1.02
VLDLR-202ENST00000382099 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
VLDLR-202ENST00000382099 UBE2Q2Q8WVN8 375 aa21.37■■□□□ 1.01
VLDLR-202ENST00000382099 RANGAP1P46060 587 aaPredicted RBP21.36■■□□□ 1.01
VLDLR-202ENST00000382099 BAZ1AQ9NRL2 1556 aaPredicted RBP21.34■■□□□ 1.01
VLDLR-202ENST00000382099 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
VLDLR-202ENST00000382099 CDK11AQ9UQ88 783 aaPredicted RBP21.31■■□□□ 1
VLDLR-202ENST00000382099 FANCIQ9NVI1 1328 aa21.3■■□□□ 1
VLDLR-202ENST00000382099 ERICH6BQ5W0A0 696 aa21.28■■□□□ 1
VLDLR-202ENST00000382099 EIF5BO60841 1220 aaKnown RBP21.27■■□□□ 1
VLDLR-202ENST00000382099 IL27Q8NEV9 243 aa21.27■□□□□ 0.99
VLDLR-202ENST00000382099 ABCC8Q09428 1581 aa21.21■□□□□ 0.99
VLDLR-202ENST00000382099 TRIM52Q96A61 297 aa21.2■□□□□ 0.98
VLDLR-202ENST00000382099 RTL5Q5HYW3 569 aaPredicted RBP21.18■□□□□ 0.98
VLDLR-202ENST00000382099 CCDC88BA6NC98 1476 aa21.17■□□□□ 0.98
VLDLR-202ENST00000382099 IRX6P78412 446 aaPredicted RBP21.16■□□□□ 0.98
VLDLR-202ENST00000382099 TOP2AP11388 1531 aaKnown RBP21.1■□□□□ 0.97
VLDLR-202ENST00000382099 WRNQ14191 1432 aaPredicted RBP eCLIP21.08■□□□□ 0.96
VLDLR-202ENST00000382099 NOP58Q9Y2X3 529 aaKnown RBP21.06■□□□□ 0.96
VLDLR-202ENST00000382099 SOGA1O94964 1423 aa21.06■□□□□ 0.96
VLDLR-202ENST00000382099 CEP162Q5TB80 1403 aa21.06■□□□□ 0.96
VLDLR-202ENST00000382099 SMARCA2P51531 1590 aa21.05■□□□□ 0.96
VLDLR-202ENST00000382099 PKNOX2Q96KN3 472 aa21.04■□□□□ 0.96
VLDLR-202ENST00000382099 SMARCA4P51532 1647 aa21.03■□□□□ 0.96
VLDLR-202ENST00000382099 UBTFP17480 764 aaKnown RBP21.01■□□□□ 0.95
VLDLR-202ENST00000382099 PAK3O75914 559 aaPredicted RBP20.99■□□□□ 0.95
VLDLR-202ENST00000382099 RUSC2Q8N2Y8 1516 aa20.98■□□□□ 0.95
VLDLR-202ENST00000382099 DDX10Q13206 875 aaKnown RBP20.97■□□□□ 0.95
VLDLR-202ENST00000382099 TNIKQ9UKE5 1360 aa20.95■□□□□ 0.94
VLDLR-202ENST00000382099 UNC13AQ9UPW8 1703 aa20.91■□□□□ 0.94
VLDLR-202ENST00000382099 TIMELESSQ9UNS1 1208 aa20.82■□□□□ 0.92
VLDLR-202ENST00000382099 PLEKHG5O94827 1062 aa20.81■□□□□ 0.92
VLDLR-202ENST00000382099 EEA1Q15075 1411 aa20.8■□□□□ 0.92
VLDLR-202ENST00000382099 ZBTB47Q9UFB7 747 aaPredicted RBP20.79■□□□□ 0.92
VLDLR-202ENST00000382099 ANP32AP39687 249 aaKnown RBP20.77■□□□□ 0.92
VLDLR-202ENST00000382099 B4GALNT3Q6L9W6 998 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 222.4 ms