Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HIST1H1AQ02539 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 RPS2P7-201ENST00000447334 885 ntBASIC17.44■□□□□ 0.38
HIST1H1AQ02539 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HIST1H1AQ02539 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HIST1H1AQ02539 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 SPCS2P3-201ENST00000500401 656 ntBASIC17.42■□□□□ 0.38
HIST1H1AQ02539 MIR6765-201ENST00000614092 87 ntBASIC17.42■□□□□ 0.38
HIST1H1AQ02539 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HIST1H1AQ02539 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 HLA-L-211ENST00000482052 1765 ntBASIC17.41■□□□□ 0.38
HIST1H1AQ02539 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
HIST1H1AQ02539 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 DUX4L9-201ENST00000449051 1259 ntBASIC17.4■□□□□ 0.38
HIST1H1AQ02539 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 DUSP8P5-201ENST00000422884 1815 ntBASIC17.4■□□□□ 0.38
HIST1H1AQ02539 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HIST1H1AQ02539 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HIST1H1AQ02539 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 U85056.1-201ENST00000616429 682 ntBASIC17.38■□□□□ 0.37
HIST1H1AQ02539 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HIST1H1AQ02539 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HIST1H1AQ02539 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HIST1H1AQ02539 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms