Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHC1P29353 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHC1P29353 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHC1P29353 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHC1P29353 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.99■□□□□ 0.95
SHC1P29353 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.99■□□□□ 0.95
SHC1P29353 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.99■□□□□ 0.95
SHC1P29353 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHC1P29353 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHC1P29353 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHC1P29353 AP003733.4-201ENST00000623785 1697 ntBASIC20.99■□□□□ 0.95
SHC1P29353 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHC1P29353 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 AC012676.1-201ENST00000574705 1949 ntBASIC20.98■□□□□ 0.95
SHC1P29353 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.98■□□□□ 0.95
SHC1P29353 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SHC1P29353 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHC1P29353 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHC1P29353 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHC1P29353 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.97■□□□□ 0.95
SHC1P29353 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHC1P29353 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.97■□□□□ 0.95
SHC1P29353 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.97■□□□□ 0.95
SHC1P29353 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SHC1P29353 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SHC1P29353 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHC1P29353 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHC1P29353 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SHC1P29353 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.96■□□□□ 0.95
SHC1P29353 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.96■□□□□ 0.95
SHC1P29353 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.96■□□□□ 0.95
SHC1P29353 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SHC1P29353 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SHC1P29353 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHC1P29353 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
SHC1P29353 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SHC1P29353 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.95■□□□□ 0.94
SHC1P29353 AL035685.1-201ENST00000636663 812 ntBASIC20.95■□□□□ 0.94
SHC1P29353 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SHC1P29353 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SHC1P29353 HLA-L-211ENST00000482052 1765 ntBASIC20.95■□□□□ 0.94
SHC1P29353 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SHC1P29353 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHC1P29353 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHC1P29353 AF131216.4-201ENST00000638924 1588 ntBASIC20.94■□□□□ 0.94
SHC1P29353 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SHC1P29353 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SHC1P29353 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SHC1P29353 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHC1P29353 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SHC1P29353 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.94■□□□□ 0.94
SHC1P29353 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.94■□□□□ 0.94
SHC1P29353 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHC1P29353 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHC1P29353 AC068473.5-201ENST00000616428 2072 ntBASIC20.93■□□□□ 0.94
SHC1P29353 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SHC1P29353 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.93■□□□□ 0.94
SHC1P29353 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SHC1P29353 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHC1P29353 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHC1P29353 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHC1P29353 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SHC1P29353 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHC1P29353 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHC1P29353 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.92■□□□□ 0.94
SHC1P29353 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHC1P29353 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SHC1P29353 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.91■□□□□ 0.94
SHC1P29353 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHC1P29353 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHC1P29353 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SHC1P29353 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.91■□□□□ 0.94
SHC1P29353 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHC1P29353 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SHC1P29353 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms