Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 AC000095.1-201ENST00000603208 874 ntBASIC14.37□□□□□ -0.11
COL21A1Q96P44 AL391069.4-201ENST00000609583 481 ntBASIC14.37□□□□□ -0.11
COL21A1Q96P44 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL21A1Q96P44 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL21A1Q96P44 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 CICP14-201ENST00000629111 2732 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 AC005840.4-201ENST00000541242 2494 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 MIR3197-201ENST00000582241 73 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 AC025181.2-201ENST00000606994 802 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 CLK3P2-201ENST00000427566 1453 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
COL21A1Q96P44 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 AC041040.2-201ENST00000622926 2899 ntBASIC14.36□□□□□ -0.11
COL21A1Q96P44 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL21A1Q96P44 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 AC067750.1-201ENST00000608826 6545 ntBASIC14.35□□□□□ -0.11
COL21A1Q96P44 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL21A1Q96P44 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.35□□□□□ -0.11
COL21A1Q96P44 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms