RNA–Protein interactions for RNA: ENST00000544551.5

RDX-218, Transcript of radixin, humanhuman

TSL 2 BASIC

Gene RDX, Length 4,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDX-218ENST00000544551 NISCHQ9Y2I1 1504 aa28.25■■■□□ 2.11
RDX-218ENST00000544551 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
RDX-218ENST00000544551 SHROOM4Q9ULL8 1493 aa26.14■■□□□ 1.77
RDX-218ENST00000544551 SUPT5HO00267 1087 aaKnown RBP25.99■■□□□ 1.75
RDX-218ENST00000544551 EHMT2Q96KQ7 1210 aa24.73■■□□□ 1.55
RDX-218ENST00000544551 PCGF6Q9BYE7 350 aa24.47■■□□□ 1.51
RDX-218ENST00000544551 FAM9AQ8IZU1 332 aaPredicted RBP24.33■■□□□ 1.49
RDX-218ENST00000544551 CHIC1Q5VXU3 224 aa24.24■■□□□ 1.47
RDX-218ENST00000544551 LOC105371045A0A1W2PR82 267 aa24.15■■□□□ 1.46
RDX-218ENST00000544551 TRIM41Q8WV44 630 aa23.83■■□□□ 1.41
RDX-218ENST00000544551 TTBK1Q5TCY1 1321 aaPredicted RBP23.83■■□□□ 1.4
RDX-218ENST00000544551 PPARGC1BQ86YN6 1023 aaKnown RBP23.79■■□□□ 1.4
RDX-218ENST00000544551 HRCP23327 699 aa23.7■■□□□ 1.39
RDX-218ENST00000544551 ZCCHC6Q5VYS8 1495 aaKnown RBP23.64■■□□□ 1.37
RDX-218ENST00000544551 MYO15BQ96JP2 1530 aa23.48■■□□□ 1.35
RDX-218ENST00000544551 TRIM26Q12899 539 aaPredicted RBP23.34■■□□□ 1.33
RDX-218ENST00000544551 RANGAP1P46060 587 aaPredicted RBP23.33■■□□□ 1.33
RDX-218ENST00000544551 ABCC9O60706 1549 aa23.3■■□□□ 1.32
RDX-218ENST00000544551 CCER1Q8TC90 406 aaPredicted RBP23.11■■□□□ 1.29
RDX-218ENST00000544551 CCDC180Q9P1Z9 1646 aa23.09■■□□□ 1.29
RDX-218ENST00000544551 UBTFP17480 764 aaKnown RBP23.09■■□□□ 1.29
RDX-218ENST00000544551 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
RDX-218ENST00000544551 PABPN1Q86U42 306 aaKnown RBP eCLIP22.96■■□□□ 1.27
RDX-218ENST00000544551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.95■■□□□ 1.26
RDX-218ENST00000544551 ZEB1P37275 1124 aaPredicted RBP22.9■■□□□ 1.26
RDX-218ENST00000544551 APLP2Q06481 763 aa22.81■■□□□ 1.24
RDX-218ENST00000544551 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
RDX-218ENST00000544551 HNRNPUL2Q1KMD3 747 aaKnown RBP22.65■■□□□ 1.22
RDX-218ENST00000544551 YTHDC1Q96MU7 727 aaKnown RBP22.62■■□□□ 1.21
RDX-218ENST00000544551 DCAF1Q9Y4B6 1507 aa22.61■■□□□ 1.21
RDX-218ENST00000544551 CECR2Q9BXF3 1484 aa22.51■■□□□ 1.19
RDX-218ENST00000544551 ATP1B4Q9UN42 357 aaPredicted RBP22.46■■□□□ 1.19
RDX-218ENST00000544551 ITGAEP38570 1179 aa22.41■■□□□ 1.18
RDX-218ENST00000544551 DIEXFQ68CQ4 756 aaKnown RBP22.32■■□□□ 1.16
RDX-218ENST00000544551 RB1CC1Q8TDY2 1594 aa22.31■■□□□ 1.16
RDX-218ENST00000544551 CSRNP3Q8WYN3 585 aa22.31■■□□□ 1.16
RDX-218ENST00000544551 CENPBP07199 599 aaPredicted RBP22.3■■□□□ 1.16
RDX-218ENST00000544551 MROH2BQ7Z745 1585 aa22.18■■□□□ 1.14
RDX-218ENST00000544551 GTF3C3Q9Y5Q9 886 aa22.02■■□□□ 1.12
RDX-218ENST00000544551 SCAF1Q9H7N4 1312 aaKnown RBP21.99■■□□□ 1.11
RDX-218ENST00000544551 SOGA1O94964 1423 aa21.96■■□□□ 1.11
RDX-218ENST00000544551 NACADO15069 1562 aa21.95■■□□□ 1.1
RDX-218ENST00000544551 WIZO95785 1651 aa21.95■■□□□ 1.1
RDX-218ENST00000544551 NEUROD1Q13562 356 aa21.93■■□□□ 1.1
RDX-218ENST00000544551 ABCC8Q09428 1581 aa21.92■■□□□ 1.1
RDX-218ENST00000544551 ZNF316A6NFI3 1004 aaPredicted RBP21.89■■□□□ 1.09
RDX-218ENST00000544551 CEP162Q5TB80 1403 aa21.89■■□□□ 1.09
RDX-218ENST00000544551 P3H3Q8IVL6 736 aa21.89■■□□□ 1.09
RDX-218ENST00000544551 CCDC88BA6NC98 1476 aa21.88■■□□□ 1.09
RDX-218ENST00000544551 ACIN1Q9UKV3 1341 aaKnown RBP21.87■■□□□ 1.09
RDX-218ENST00000544551 FAM50AQ14320 339 aaKnown RBP21.78■■□□□ 1.08
RDX-218ENST00000544551 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
RDX-218ENST00000544551 PELP1Q8IZL8 1130 aaKnown RBP21.71■■□□□ 1.07
RDX-218ENST00000544551 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
RDX-218ENST00000544551 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
RDX-218ENST00000544551 MIER1Q8N108 512 aa21.68■■□□□ 1.06
RDX-218ENST00000544551 CLIP1P30622 1438 aa21.66■■□□□ 1.06
RDX-218ENST00000544551 TNIKQ9UKE5 1360 aa21.64■■□□□ 1.05
RDX-218ENST00000544551 CNGB1Q14028 1251 aaPredicted RBP21.61■■□□□ 1.05
RDX-218ENST00000544551 ARID3CA6NKF2 412 aa21.57■■□□□ 1.04
RDX-218ENST00000544551 GOLGA3Q08378 1498 aa21.54■■□□□ 1.04
RDX-218ENST00000544551 BCANQ96GW7 911 aa21.48■■□□□ 1.03
RDX-218ENST00000544551 HIRIP3Q9BW71 556 aaPredicted RBP21.48■■□□□ 1.03
RDX-218ENST00000544551 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.03
RDX-218ENST00000544551 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
RDX-218ENST00000544551 EEA1Q15075 1411 aa21.41■■□□□ 1.02
RDX-218ENST00000544551 TOP2AP11388 1531 aaKnown RBP21.39■■□□□ 1.02
RDX-218ENST00000544551 POLR3GLQ9BT43 218 aa21.37■■□□□ 1.01
RDX-218ENST00000544551 CEP164Q9UPV0 1460 aa21.35■■□□□ 1.01
RDX-218ENST00000544551 DDX10Q13206 875 aaKnown RBP21.33■■□□□ 1.01
RDX-218ENST00000544551 SMARCA4P51532 1647 aa21.33■■□□□ 1.01
RDX-218ENST00000544551 TRIM52Q96A61 297 aa21.3■■□□□ 1
RDX-218ENST00000544551 NEFLP07196 543 aa21.29■■□□□ 1
RDX-218ENST00000544551 RAPGEF2Q9Y4G8 1499 aa21.26■□□□□ 0.99
RDX-218ENST00000544551 SMARCA2P51531 1590 aa21.26■□□□□ 0.99
RDX-218ENST00000544551 SIN3AQ96ST3 1273 aa21.23■□□□□ 0.99
RDX-218ENST00000544551 CHIC2Q9UKJ5 165 aa21.2■□□□□ 0.98
RDX-218ENST00000544551 VPS8Q8N3P4 1428 aa21.19■□□□□ 0.98
RDX-218ENST00000544551 ATAD2BQ9ULI0 1458 aa21.16■□□□□ 0.98
RDX-218ENST00000544551 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
RDX-218ENST00000544551 FBLN2P98095 1184 aa21.12■□□□□ 0.97
RDX-218ENST00000544551 ZNF326Q5BKZ1 582 aaKnown RBP21.09■□□□□ 0.97
RDX-218ENST00000544551 ANP32CO43423 234 aa21.06■□□□□ 0.96
RDX-218ENST00000544551 CUX2O14529 1486 aa21.02■□□□□ 0.96
RDX-218ENST00000544551 FKBP8Q14318 412 aa21.01■□□□□ 0.95
RDX-218ENST00000544551 RRP7BPQ9NSQ0 103 aa21.01■□□□□ 0.95
RDX-218ENST00000544551 CCNB3Q8WWL7 1395 aa20.99■□□□□ 0.95
RDX-218ENST00000544551 KCNH8Q96L42 1107 aa20.99■□□□□ 0.95
RDX-218ENST00000544551 ZNF777Q9ULD5 760 aaPredicted RBP20.96■□□□□ 0.95
RDX-218ENST00000544551 CARMIL1Q5VZK9 1371 aa20.96■□□□□ 0.95
RDX-218ENST00000544551 SYNJ1O43426 1573 aa20.95■□□□□ 0.94
RDX-218ENST00000544551 SENP3-EIF4A1A0A087X0R7 540 aa20.94■□□□□ 0.94
RDX-218ENST00000544551 TONSLQ96HA7 1378 aa20.93■□□□□ 0.94
RDX-218ENST00000544551 MTUS2Q5JR59 1369 aa20.92■□□□□ 0.94
RDX-218ENST00000544551 IRX6P78412 446 aaPredicted RBP20.89■□□□□ 0.94
RDX-218ENST00000544551 ERICH6Q7L0X2 663 aa20.88■□□□□ 0.93
RDX-218ENST00000544551 DHX57Q6P158 1386 aaKnown RBP20.87■□□□□ 0.93
RDX-218ENST00000544551 RAB3GAP2Q9H2M9 1393 aa20.85■□□□□ 0.93
RDX-218ENST00000544551 HNRNPUQ00839 825 aaKnown RBP eCLIP20.84■□□□□ 0.93
RDX-218ENST00000544551 FAM9BQ8IZU0 186 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms