RNA–Protein interactions for RNA: ENST00000427566.2

CLK3P2-201, Transcript of CDC like kinase 3 pseudogene 2, humanhuman

BASIC

Gene CLK3P2, Length 1,453 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P2-201ENST00000427566 NISCHQ9Y2I1 1504 aa37.99■■■■□ 3.67
CLK3P2-201ENST00000427566 CCDC180Q9P1Z9 1646 aa33.88■■■■□ 3.01
CLK3P2-201ENST00000427566 ABCC9O60706 1549 aa33.32■■■□□ 2.92
CLK3P2-201ENST00000427566 DCAF8L2P0C7V8 631 aa31.97■■■□□ 2.71
CLK3P2-201ENST00000427566 RB1CC1Q8TDY2 1594 aa31.95■■■□□ 2.71
CLK3P2-201ENST00000427566 NACADO15069 1562 aa31.84■■■□□ 2.69
CLK3P2-201ENST00000427566 ZCCHC6Q5VYS8 1495 aaKnown RBP31.61■■■□□ 2.65
CLK3P2-201ENST00000427566 MYO15BQ96JP2 1530 aa31.5■■■□□ 2.63
CLK3P2-201ENST00000427566 UNC13AQ9UPW8 1703 aa31.36■■■□□ 2.61
CLK3P2-201ENST00000427566 DCAF1Q9Y4B6 1507 aa31.35■■■□□ 2.61
CLK3P2-201ENST00000427566 PABPN1Q86U42 306 aaKnown RBP eCLIP31.1■■■□□ 2.57
CLK3P2-201ENST00000427566 SCRIBQ14160 1630 aa30.99■■■□□ 2.55
CLK3P2-201ENST00000427566 BICRAQ9NZM4 1560 aa30.96■■■□□ 2.55
CLK3P2-201ENST00000427566 DNAJC5BQ9UF47 199 aa30.62■■■□□ 2.49
CLK3P2-201ENST00000427566 SHROOM4Q9ULL8 1493 aa30.52■■■□□ 2.48
CLK3P2-201ENST00000427566 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
CLK3P2-201ENST00000427566 CC2D2AQ9P2K1 1620 aa30.12■■■□□ 2.41
CLK3P2-201ENST00000427566 CECR2Q9BXF3 1484 aa29.9■■■□□ 2.38
CLK3P2-201ENST00000427566 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
CLK3P2-201ENST00000427566 BAZ1AQ9NRL2 1556 aaPredicted RBP29.48■■■□□ 2.31
CLK3P2-201ENST00000427566 ATAD2BQ9ULI0 1458 aa29.36■■■□□ 2.29
CLK3P2-201ENST00000427566 SMARCA2P51531 1590 aa29.35■■■□□ 2.29
CLK3P2-201ENST00000427566 NCAPD3P42695 1498 aa29.33■■■□□ 2.29
CLK3P2-201ENST00000427566 MROH2BQ7Z745 1585 aa29.31■■■□□ 2.28
CLK3P2-201ENST00000427566 HMGXB3Q12766 1538 aa29.21■■■□□ 2.27
CLK3P2-201ENST00000427566 PEG3Q9GZU2 1588 aa29.18■■■□□ 2.26
CLK3P2-201ENST00000427566 BAZ1BQ9UIG0 1483 aaKnown RBP29.18■■■□□ 2.26
CLK3P2-201ENST00000427566 WIZO95785 1651 aa29.08■■■□□ 2.25
CLK3P2-201ENST00000427566 RSF1Q96T23 1441 aaPredicted RBP28.89■■■□□ 2.21
CLK3P2-201ENST00000427566 NESP48681 1621 aa28.78■■■□□ 2.2
CLK3P2-201ENST00000427566 ERCC6Q03468 1493 aa28.74■■■□□ 2.19
CLK3P2-201ENST00000427566 TOP2AP11388 1531 aaKnown RBP28.67■■■□□ 2.18
CLK3P2-201ENST00000427566 LAMC3Q9Y6N6 1575 aa28.66■■■□□ 2.18
CLK3P2-201ENST00000427566 KIF21AQ7Z4S6 1674 aa28.52■■■□□ 2.16
CLK3P2-201ENST00000427566 CADPSQ9ULU8 1353 aa28.49■■■□□ 2.15
CLK3P2-201ENST00000427566 PDS5BQ9NTI5 1447 aa28.44■■■□□ 2.14
CLK3P2-201ENST00000427566 CUX2O14529 1486 aa28.38■■■□□ 2.13
CLK3P2-201ENST00000427566 THOC2Q8NI27 1593 aaKnown RBP28.35■■■□□ 2.13
CLK3P2-201ENST00000427566 SUPT5HO00267 1087 aaKnown RBP28.34■■■□□ 2.13
CLK3P2-201ENST00000427566 CCDC88BA6NC98 1476 aa28.33■■■□□ 2.13
CLK3P2-201ENST00000427566 CFTRP13569 1480 aa28.3■■■□□ 2.12
CLK3P2-201ENST00000427566 PRDM2Q13029 1718 aa28.25■■■□□ 2.11
CLK3P2-201ENST00000427566 FANCD2Q9BXW9 1451 aa28.22■■■□□ 2.11
CLK3P2-201ENST00000427566 CEP164Q9UPV0 1460 aa28.21■■■□□ 2.11
CLK3P2-201ENST00000427566 MRC2Q9UBG0 1479 aa28.18■■■□□ 2.1
CLK3P2-201ENST00000427566 WDR62O43379 1518 aa28.08■■■□□ 2.09
CLK3P2-201ENST00000427566 URB2Q14146 1524 aaKnown RBP27.94■■■□□ 2.06
CLK3P2-201ENST00000427566 TOPBP1Q92547 1522 aa27.76■■■□□ 2.03
CLK3P2-201ENST00000427566 DNMBPQ6XZF7 1577 aa27.72■■■□□ 2.03
CLK3P2-201ENST00000427566 ABCC8Q09428 1581 aa27.71■■■□□ 2.03
CLK3P2-201ENST00000427566 DNAJC5Q9H3Z4 198 aa27.64■■■□□ 2.02
CLK3P2-201ENST00000427566 IFT140Q96RY7 1462 aa27.59■■■□□ 2.01
CLK3P2-201ENST00000427566 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■□□□ 1.99
CLK3P2-201ENST00000427566 CUX1P39880 1505 aa27.51■■□□□ 1.99
CLK3P2-201ENST00000427566 POLA1P09884 1462 aaPredicted RBP27.5■■□□□ 1.99
CLK3P2-201ENST00000427566 TARBP1Q13395 1621 aaKnown RBP27.47■■□□□ 1.99
CLK3P2-201ENST00000427566 FGD5Q6ZNL6 1462 aa27.45■■□□□ 1.99
CLK3P2-201ENST00000427566 EIF4G3O43432 1585 aaKnown RBP27.44■■□□□ 1.98
CLK3P2-201ENST00000427566 RAD54L2Q9Y4B4 1467 aa27.42■■□□□ 1.98
CLK3P2-201ENST00000427566 SOGA1O94964 1423 aa27.4■■□□□ 1.98
CLK3P2-201ENST00000427566 AQRO60306 1485 aaKnown RBP eCLIP27.35■■□□□ 1.97
CLK3P2-201ENST00000427566 WRNQ14191 1432 aaPredicted RBP eCLIP27.28■■□□□ 1.96
CLK3P2-201ENST00000427566 TDRD9Q8NDG6 1382 aaKnown RBP27.28■■□□□ 1.96
CLK3P2-201ENST00000427566 BIVM-ERCC5R4GMW8 1640 aa27.26■■□□□ 1.96
CLK3P2-201ENST00000427566 WDR97A6NE52 1622 aa27.26■■□□□ 1.95
CLK3P2-201ENST00000427566 SYNJ1O43426 1573 aa27.26■■□□□ 1.95
CLK3P2-201ENST00000427566 TOP2BQ02880 1626 aa27.24■■□□□ 1.95
CLK3P2-201ENST00000427566 OSCARQ8IYS5 282 aa27.22■■□□□ 1.95
CLK3P2-201ENST00000427566 CHD1O14646 1710 aa27.2■■□□□ 1.94
CLK3P2-201ENST00000427566 PBRM1Q86U86 1689 aa27.15■■□□□ 1.94
CLK3P2-201ENST00000427566 FBLN2P98095 1184 aa27.13■■□□□ 1.93
CLK3P2-201ENST00000427566 ABCA10Q8WWZ4 1543 aa27.12■■□□□ 1.93
CLK3P2-201ENST00000427566 SNAPC4Q5SXM2 1469 aa27.1■■□□□ 1.93
CLK3P2-201ENST00000427566 GAPVD1Q14C86 1478 aa27.09■■□□□ 1.93
CLK3P2-201ENST00000427566 GRIN2BQ13224 1484 aa27.08■■□□□ 1.93
CLK3P2-201ENST00000427566 ABCA5Q8WWZ7 1642 aa27.07■■□□□ 1.92
CLK3P2-201ENST00000427566 MAGI1Q96QZ7 1491 aaPredicted RBP27.01■■□□□ 1.91
CLK3P2-201ENST00000427566 CHMP7Q8WUX9 453 aaPredicted RBP26.97■■□□□ 1.91
CLK3P2-201ENST00000427566 SYNJ2O15056 1496 aa26.91■■□□□ 1.9
CLK3P2-201ENST00000427566 RIMBP3CA6NJZ7 1639 aa26.86■■□□□ 1.89
CLK3P2-201ENST00000427566 RIMBP3BA6NNM3 1639 aa26.86■■□□□ 1.89
CLK3P2-201ENST00000427566 RIMBP3Q9UFD9 1639 aa26.86■■□□□ 1.89
CLK3P2-201ENST00000427566 TRIM41Q8WV44 630 aa26.84■■□□□ 1.89
CLK3P2-201ENST00000427566 ADAMTS12P58397 1594 aa26.83■■□□□ 1.89
CLK3P2-201ENST00000427566 ERICH3Q5RHP9 1530 aa26.81■■□□□ 1.88
CLK3P2-201ENST00000427566 ARHGEF11O15085 1522 aa26.79■■□□□ 1.88
CLK3P2-201ENST00000427566 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
CLK3P2-201ENST00000427566 FHAD1B1AJZ9 1412 aa26.74■■□□□ 1.87
CLK3P2-201ENST00000427566 GRIN2AQ12879 1464 aa26.73■■□□□ 1.87
CLK3P2-201ENST00000427566 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
CLK3P2-201ENST00000427566 CEP170Q5SW79 1584 aa26.65■■□□□ 1.86
CLK3P2-201ENST00000427566 CUL7Q14999 1698 aa26.61■■□□□ 1.85
CLK3P2-201ENST00000427566 CYB5RLQ6IPT4 315 aa26.59■■□□□ 1.85
CLK3P2-201ENST00000427566 NUP160Q12769 1436 aa26.57■■□□□ 1.84
CLK3P2-201ENST00000427566 IGF1RP08069 1367 aa26.57■■□□□ 1.84
CLK3P2-201ENST00000427566 ARAP1Q96P48 1450 aa26.56■■□□□ 1.84
CLK3P2-201ENST00000427566 CHIC1Q5VXU3 224 aa26.55■■□□□ 1.84
CLK3P2-201ENST00000427566 RUSC2Q8N2Y8 1516 aa26.52■■□□□ 1.84
CLK3P2-201ENST00000427566 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
CLK3P2-201ENST00000427566 SHROOM2Q13796 1616 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms