RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 NISCHQ9Y2I1 1504 aa25.58■■□□□ 1.69
VPS36-207ENST00000611132 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
VPS36-207ENST00000611132 DCAF8L2P0C7V8 631 aa24.27■■□□□ 1.48
VPS36-207ENST00000611132 SHROOM4Q9ULL8 1493 aa24.02■■□□□ 1.44
VPS36-207ENST00000611132 PCGF6Q9BYE7 350 aa23.54■■□□□ 1.36
VPS36-207ENST00000611132 HRCP23327 699 aa23.17■■□□□ 1.3
VPS36-207ENST00000611132 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
VPS36-207ENST00000611132 EHMT2Q96KQ7 1210 aa22.98■■□□□ 1.27
VPS36-207ENST00000611132 ZEB1P37275 1124 aaPredicted RBP22.98■■□□□ 1.27
VPS36-207ENST00000611132 FAM9AQ8IZU1 332 aaPredicted RBP22.75■■□□□ 1.23
VPS36-207ENST00000611132 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
VPS36-207ENST00000611132 CENPBP07199 599 aaPredicted RBP22.66■■□□□ 1.22
VPS36-207ENST00000611132 TRIM26Q12899 539 aaPredicted RBP22.65■■□□□ 1.22
VPS36-207ENST00000611132 PPARGC1BQ86YN6 1023 aaKnown RBP22.62■■□□□ 1.21
VPS36-207ENST00000611132 TRIM41Q8WV44 630 aa22.54■■□□□ 1.2
VPS36-207ENST00000611132 MYT1Q01538 1121 aa22.5■■□□□ 1.19
VPS36-207ENST00000611132 CCER1Q8TC90 406 aaPredicted RBP22.49■■□□□ 1.19
VPS36-207ENST00000611132 LOC105371045A0A1W2PR82 267 aa22.42■■□□□ 1.18
VPS36-207ENST00000611132 TTBK1Q5TCY1 1321 aaPredicted RBP22.35■■□□□ 1.17
VPS36-207ENST00000611132 APLP2Q06481 763 aa22.26■■□□□ 1.15
VPS36-207ENST00000611132 YTHDC1Q96MU7 727 aaKnown RBP22.07■■□□□ 1.12
VPS36-207ENST00000611132 UBTFP17480 764 aaKnown RBP21.87■■□□□ 1.09
VPS36-207ENST00000611132 DIEXFQ68CQ4 756 aaKnown RBP21.82■■□□□ 1.08
VPS36-207ENST00000611132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.8■■□□□ 1.08
VPS36-207ENST00000611132 DCAF1Q9Y4B6 1507 aa21.75■■□□□ 1.07
VPS36-207ENST00000611132 RANGAP1P46060 587 aaPredicted RBP21.7■■□□□ 1.06
VPS36-207ENST00000611132 GTF3C3Q9Y5Q9 886 aa21.7■■□□□ 1.06
VPS36-207ENST00000611132 ERICH6Q7L0X2 663 aa21.64■■□□□ 1.05
VPS36-207ENST00000611132 ACIN1Q9UKV3 1341 aaKnown RBP21.63■■□□□ 1.05
VPS36-207ENST00000611132 NEFLP07196 543 aa21.58■■□□□ 1.05
VPS36-207ENST00000611132 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
VPS36-207ENST00000611132 HNRNPUL2Q1KMD3 747 aaKnown RBP21.49■■□□□ 1.03
VPS36-207ENST00000611132 SCAF1Q9H7N4 1312 aaKnown RBP21.46■■□□□ 1.03
VPS36-207ENST00000611132 ZCCHC6Q5VYS8 1495 aaKnown RBP21.45■■□□□ 1.02
VPS36-207ENST00000611132 ZNF316A6NFI3 1004 aaPredicted RBP21.34■■□□□ 1.01
VPS36-207ENST00000611132 NEUROD1Q13562 356 aa21.28■■□□□ 1
VPS36-207ENST00000611132 ATP1B4Q9UN42 357 aaPredicted RBP21.19■□□□□ 0.98
VPS36-207ENST00000611132 CCDC180Q9P1Z9 1646 aa21.15■□□□□ 0.98
VPS36-207ENST00000611132 ITGAEP38570 1179 aa21.13■□□□□ 0.97
VPS36-207ENST00000611132 BCANQ96GW7 911 aa20.94■□□□□ 0.94
VPS36-207ENST00000611132 CLSPNQ9HAW4 1339 aa20.91■□□□□ 0.94
VPS36-207ENST00000611132 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.93
VPS36-207ENST00000611132 MIER1Q8N108 512 aa20.79■□□□□ 0.92
VPS36-207ENST00000611132 ANP32CO43423 234 aa20.69■□□□□ 0.9
VPS36-207ENST00000611132 SCRIBQ14160 1630 aa20.68■□□□□ 0.9
VPS36-207ENST00000611132 RSF1Q96T23 1441 aaPredicted RBP20.67■□□□□ 0.9
VPS36-207ENST00000611132 CDK11AQ9UQ88 783 aaPredicted RBP20.65■□□□□ 0.9
VPS36-207ENST00000611132 FAM50AQ14320 339 aaKnown RBP20.64■□□□□ 0.9
VPS36-207ENST00000611132 ABCC9O60706 1549 aa20.61■□□□□ 0.89
VPS36-207ENST00000611132 RTL5Q5HYW3 569 aaPredicted RBP20.61■□□□□ 0.89
VPS36-207ENST00000611132 FKBP8Q14318 412 aa20.6■□□□□ 0.89
VPS36-207ENST00000611132 POLR3GLQ9BT43 218 aa20.55■□□□□ 0.88
VPS36-207ENST00000611132 DAXXQ9UER7 740 aaPredicted RBP20.52■□□□□ 0.87
VPS36-207ENST00000611132 CEP162Q5TB80 1403 aa20.49■□□□□ 0.87
VPS36-207ENST00000611132 CNGB1Q14028 1251 aaPredicted RBP20.49■□□□□ 0.87
VPS36-207ENST00000611132 DDX10Q13206 875 aaKnown RBP20.41■□□□□ 0.86
VPS36-207ENST00000611132 PABPN1Q86U42 306 aaKnown RBP eCLIP20.4■□□□□ 0.86
VPS36-207ENST00000611132 ANP32EQ9BTT0 268 aa20.4■□□□□ 0.86
VPS36-207ENST00000611132 RB1CC1Q8TDY2 1594 aa20.36■□□□□ 0.85
VPS36-207ENST00000611132 TNIKQ9UKE5 1360 aa20.35■□□□□ 0.85
VPS36-207ENST00000611132 EEA1Q15075 1411 aa20.35■□□□□ 0.85
VPS36-207ENST00000611132 CLIP1P30622 1438 aa20.34■□□□□ 0.85
VPS36-207ENST00000611132 TRIM52Q96A61 297 aa20.32■□□□□ 0.84
VPS36-207ENST00000611132 SUPT16HQ9Y5B9 1047 aaKnown RBP20.3■□□□□ 0.84
VPS36-207ENST00000611132 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
VPS36-207ENST00000611132 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
VPS36-207ENST00000611132 MYT1LQ9UL68 1186 aa20.25■□□□□ 0.83
VPS36-207ENST00000611132 ANP32AP39687 249 aaKnown RBP20.22■□□□□ 0.83
VPS36-207ENST00000611132 TONSLQ96HA7 1378 aa20.19■□□□□ 0.82
VPS36-207ENST00000611132 P3H3Q8IVL6 736 aa20.14■□□□□ 0.81
VPS36-207ENST00000611132 CEP164Q9UPV0 1460 aa20.07■□□□□ 0.8
VPS36-207ENST00000611132 HIRIP3Q9BW71 556 aaPredicted RBP20.06■□□□□ 0.8
VPS36-207ENST00000611132 CECR2Q9BXF3 1484 aa20.06■□□□□ 0.8
VPS36-207ENST00000611132 IRX6P78412 446 aaPredicted RBP20.05■□□□□ 0.8
VPS36-207ENST00000611132 WRNQ14191 1432 aaPredicted RBP eCLIP20.04■□□□□ 0.8
VPS36-207ENST00000611132 ZNF326Q5BKZ1 582 aaKnown RBP20.04■□□□□ 0.8
VPS36-207ENST00000611132 FAM9BQ8IZU0 186 aa20.04■□□□□ 0.8
VPS36-207ENST00000611132 SOGA1O94964 1423 aa20.03■□□□□ 0.8
VPS36-207ENST00000611132 BCL11AQ9H165 835 aa20.01■□□□□ 0.79
VPS36-207ENST00000611132 NBR1Q14596 966 aa20■□□□□ 0.79
VPS36-207ENST00000611132 NPM2Q86SE8 214 aaKnown RBP19.99■□□□□ 0.79
VPS36-207ENST00000611132 TSHZ2Q9NRE2 1034 aa19.98■□□□□ 0.79
VPS36-207ENST00000611132 CCDC136Q96JN2 1154 aa19.94■□□□□ 0.78
VPS36-207ENST00000611132 ZBTB47Q9UFB7 747 aaPredicted RBP19.94■□□□□ 0.78
VPS36-207ENST00000611132 MRS2Q9HD23 443 aa19.92■□□□□ 0.78
VPS36-207ENST00000611132 RBM19Q9Y4C8 960 aaKnown RBP19.91■□□□□ 0.78
VPS36-207ENST00000611132 MROH2BQ7Z745 1585 aa19.9■□□□□ 0.78
VPS36-207ENST00000611132 BAZ1AQ9NRL2 1556 aaPredicted RBP19.9■□□□□ 0.78
VPS36-207ENST00000611132 VPS8Q8N3P4 1428 aa19.89■□□□□ 0.78
VPS36-207ENST00000611132 CCDC88BA6NC98 1476 aa19.89■□□□□ 0.77
VPS36-207ENST00000611132 NACADO15069 1562 aa19.88■□□□□ 0.77
VPS36-207ENST00000611132 ABCC8Q09428 1581 aa19.84■□□□□ 0.77
VPS36-207ENST00000611132 SIN3AQ96ST3 1273 aa19.83■□□□□ 0.77
VPS36-207ENST00000611132 CCNB3Q8WWL7 1395 aa19.82■□□□□ 0.76
VPS36-207ENST00000611132 EIF4G2P78344 907 aaKnown RBP eCLIP19.81■□□□□ 0.76
VPS36-207ENST00000611132 CCER2I3L3R5 266 aa19.8■□□□□ 0.76
VPS36-207ENST00000611132 PPP4R2Q9NY27 417 aa19.79■□□□□ 0.76
VPS36-207ENST00000611132 EIF5BO60841 1220 aaKnown RBP19.77■□□□□ 0.76
VPS36-207ENST00000611132 TMC1Q8TDI8 760 aa19.75■□□□□ 0.75
VPS36-207ENST00000611132 TIMELESSQ9UNS1 1208 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms