Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 RN7SKP214-201ENST00000364208 315 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AC090857.1-201ENST00000527400 390 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AL160314.3-201ENST00000556041 767 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 NPM1P43-201ENST00000558669 786 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AC242376.1-201ENST00000559033 726 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AC009955.4-201ENST00000597192 544 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AL358472.3-201ENST00000608147 415 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 FKBP4P6-201ENST00000457486 1332 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 AC084364.1-201ENST00000551967 1556 ntBASIC16.33■□□□□ 0.2
HERC6Q8IVU3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HERC6Q8IVU3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 RPL18P13-201ENST00000478088 569 ntBASIC16.32■□□□□ 0.2
HERC6Q8IVU3 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 AP000593.2-201ENST00000542775 1433 ntBASIC16.32■□□□□ 0.2
HERC6Q8IVU3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 PGAM1P5-201ENST00000548011 764 ntBASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 NAP1L6-202ENST00000641404 1222 ntBASIC16.32■□□□□ 0.2
HERC6Q8IVU3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERC6Q8IVU3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
HERC6Q8IVU3 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms