Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 KIF2A-207ENST00000509663 759 ntTSL 321.46■■□□□ 1.036e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-206ENST00000558895 533 ntTSL 426.79■■□□□ 1.884e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-218ENST00000561085 582 ntTSL 424.99■■□□□ 1.594e-6■■■■■ 88.1
SF3B1O75533 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.413e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-211ENST00000559322 559 ntTSL 421.5■■□□□ 1.034e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-215ENST00000560089 2804 ntTSL 1 (best)19.88■□□□□ 0.774e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-210ENST00000559300 541 ntTSL 419.72■□□□□ 0.754e-6■■■■■ 88.1
SF3B1O75533 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.274e-6■■■■■ 88.1
SF3B1O75533 SDC3-203ENST00000471567 589 ntTSL 316.61■□□□□ 0.254e-6■■■■■ 88.1
SF3B1O75533 ATF7IP-223ENST00000545723 577 ntTSL 415.91■□□□□ 0.144e-6■■■■■ 88.1
SF3B1O75533 ATF7IP-211ENST00000538511 558 ntTSL 413.91□□□□□ -0.184e-6■■■■■ 88.1
SF3B1O75533 GANAB-207ENST00000526732 824 ntTSL 213.51□□□□□ -0.256e-9■■■■■ 88.1
SF3B1O75533 ATF7IP-213ENST00000539659 2298 ntTSL 212.88□□□□□ -0.354e-6■■■■■ 88.1
SF3B1O75533 ATF7IP-219ENST00000542967 564 ntTSL 58.98□□□□□ -0.974e-6■■■■■ 88.1
SF3B1O75533 ATF7IP-205ENST00000535132 572 ntTSL 48.29□□□□□ -1.084e-6■■■■■ 88.1
SF3B1O75533 ATF7IP-204ENST00000534828 550 ntTSL 37.02□□□□□ -1.284e-6■■■■■ 88.1
SF3B1O75533 PPP2R3C-206ENST00000554361 684 ntTSL 56.91□□□□□ -1.34e-6■■■■■ 88.1
SF3B1O75533 ANKIB1-204ENST00000439883 774 ntTSL 32.98□□□□□ -1.933e-7■■■■■ 88.1
SF3B1O75533 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC12.32□□□□□ -0.444e-6■■■■■ 88
SF3B1O75533 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.454e-6■■■■■ 88
SF3B1O75533 AMBRA1-211ENST00000533727 4817 ntTSL 1 (best) BASIC11.78□□□□□ -0.524e-6■■■■■ 88
SF3B1O75533 AMBRA1-202ENST00000458649 5351 ntTSL 2 BASIC11.1□□□□□ -0.634e-6■■■■■ 88
SF3B1O75533 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC8.91□□□□□ -0.984e-6■■■■■ 88
SF3B1O75533 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.993e-6■■■■■ 88
SF3B1O75533 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.68■□□□□ 0.267e-8■■■■■ 88
SF3B1O75533 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.217e-8■■■■■ 88
SF3B1O75533 AP000561.1-201ENST00000444130 435 ntTSL 5 BASIC10.86□□□□□ -0.673e-6■■■■■ 88
SF3B1O75533 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.211e-6■■■■■ 87.9
SF3B1O75533 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.86■■■□□ 2.699e-6■■■■■ 87.9
SF3B1O75533 SACM1L-208ENST00000463237 962 ntTSL 225.85■■□□□ 1.739e-6■■■■■ 87.9
SF3B1O75533 MAP4K5-204ENST00000554273 484 ntTSL 325.64■■□□□ 1.79e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-205ENST00000525294 916 ntTSL 224.37■■□□□ 1.499e-6■■■■■ 87.9
SF3B1O75533 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.93■■□□□ 1.429e-6■■■■■ 87.9
SF3B1O75533 PSME3-204ENST00000543428 956 ntTSL 223.59■■□□□ 1.379e-6■■■■■ 87.9
SF3B1O75533 SACM1L-204ENST00000438671 542 ntTSL 422.9■■□□□ 1.269e-6■■■■■ 87.9
SF3B1O75533 TBCD-222ENST00000576677 1926 ntTSL 1 (best)22.77■■□□□ 1.239e-6■■■■■ 87.9
SF3B1O75533 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.189e-6■■■■■ 87.9
SF3B1O75533 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.64■■□□□ 1.054e-6■■■■■ 87.9
SF3B1O75533 CLASRP-215ENST00000592056 582 ntTSL 221.55■■□□□ 1.049e-6■■■■■ 87.9
SF3B1O75533 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.28■■□□□ 19e-6■■■■■ 87.9
SF3B1O75533 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.15■□□□□ 0.989e-6■■■■■ 87.9
SF3B1O75533 SACM1L-207ENST00000455997 4661 ntTSL 1 (best)20.74■□□□□ 0.919e-6■■■■■ 87.9
SF3B1O75533 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.61■□□□□ 0.899e-6■■■■■ 87.9
SF3B1O75533 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.839e-6■■■■■ 87.9
SF3B1O75533 SNX8-209ENST00000494722 590 ntTSL 220.24■□□□□ 0.839e-6■■■■■ 87.9
SF3B1O75533 SDHA-206ENST00000505555 2230 ntTSL 220.04■□□□□ 0.84e-6■■■■■ 87.9
SF3B1O75533 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.84e-6■■■■■ 87.9
SF3B1O75533 RNF34-209ENST00000556562 542 ntTSL 219.69■□□□□ 0.744e-6■■■■■ 87.9
SF3B1O75533 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.63■□□□□ 0.739e-6■■■■■ 87.9
SF3B1O75533 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.719e-6■■■■■ 87.9
SF3B1O75533 SLC5A6-213ENST00000461757 2307 ntTSL 219.04■□□□□ 0.649e-6■■■■■ 87.9
SF3B1O75533 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.55■□□□□ 0.564e-6■■■■■ 87.9
SF3B1O75533 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.33■□□□□ 0.524e-6■■■■■ 87.9
SF3B1O75533 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.514e-6■■■■■ 87.9
SF3B1O75533 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.17■□□□□ 0.54e-6■■■■■ 87.9
SF3B1O75533 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.13■□□□□ 0.499e-6■■■■■ 87.9
SF3B1O75533 SNX8-202ENST00000419693 415 ntTSL 318.09■□□□□ 0.499e-6■■■■■ 87.9
SF3B1O75533 TBCD-223ENST00000576691 929 ntTSL 318.02■□□□□ 0.489e-6■■■■■ 87.9
SF3B1O75533 ACTN1-209ENST00000553659 434 ntTSL 417.37■□□□□ 0.379e-6■■■■■ 87.9
SF3B1O75533 HPRT1-202ENST00000462974 724 ntTSL 317.34■□□□□ 0.374e-6■■■■■ 87.9
SF3B1O75533 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.15■□□□□ 0.344e-6■■■■■ 87.9
SF3B1O75533 ATP6V0D1-213ENST00000567170 590 ntTSL 417.15■□□□□ 0.349e-6■■■■■ 87.9
SF3B1O75533 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.07■□□□□ 0.329e-6■■■■■ 87.9
SF3B1O75533 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.99■□□□□ 0.319e-6■■■■■ 87.9
SF3B1O75533 TBCD-221ENST00000576603 765 ntTSL 316.82■□□□□ 0.289e-6■■■■■ 87.9
SF3B1O75533 TBCD-220ENST00000576432 684 ntTSL 216.82■□□□□ 0.289e-6■■■■■ 87.9
SF3B1O75533 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.289e-6■■■■■ 87.9
SF3B1O75533 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.66■□□□□ 0.269e-6■■■■■ 87.9
SF3B1O75533 ATP6V0D1-214ENST00000567694 582 ntTSL 316.64■□□□□ 0.259e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-208ENST00000532634 828 ntTSL 316.56■□□□□ 0.249e-6■■■■■ 87.9
SF3B1O75533 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.239e-6■■■■■ 87.9
SF3B1O75533 RNF34-204ENST00000553407 1612 ntTSL 216.35■□□□□ 0.214e-6■■■■■ 87.9
SF3B1O75533 TBCD-218ENST00000575132 707 ntTSL 516.21■□□□□ 0.199e-6■■■■■ 87.9
SF3B1O75533 CUL2-205ENST00000374754 4440 ntTSL 515.97■□□□□ 0.154e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-203ENST00000371893 2921 ntTSL 1 (best)15.82■□□□□ 0.129e-6■■■■■ 87.9
SF3B1O75533 TBCD-226ENST00000577051 979 ntTSL 515.53■□□□□ 0.089e-6■■■■■ 87.9
SF3B1O75533 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.5■□□□□ 0.079e-6■■■■■ 87.9
SF3B1O75533 SMAD7-203ENST00000585986 563 ntTSL 415.42■□□□□ 0.069e-6■■■■■ 87.9
SF3B1O75533 SMAD7-202ENST00000545051 2211 ntTSL 214.8□□□□□ -0.049e-6■■■■■ 87.9
SF3B1O75533 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.78□□□□□ -0.044e-6■■■■■ 87.9
SF3B1O75533 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.71□□□□□ -0.059e-6■■■■■ 87.9
SF3B1O75533 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.67□□□□□ -0.069e-6■■■■■ 87.9
SF3B1O75533 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.4□□□□□ -0.19e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.119e-6■■■■■ 87.9
SF3B1O75533 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC14.19□□□□□ -0.144e-6■■■■■ 87.9
SF3B1O75533 SMAD7-204ENST00000586093 574 ntTSL 214.09□□□□□ -0.159e-6■■■■■ 87.9
SF3B1O75533 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.179e-6■■■■■ 87.9
SF3B1O75533 RNF34-206ENST00000554606 913 ntTSL 313.84□□□□□ -0.194e-6■■■■■ 87.9
SF3B1O75533 RNF34-203ENST00000392465 2051 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.224e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-210ENST00000534326 1934 ntTSL 213.37□□□□□ -0.279e-6■■■■■ 87.9
SF3B1O75533 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC13.35□□□□□ -0.279e-6■■■■■ 87.9
SF3B1O75533 ACTN1-221ENST00000556571 568 ntTSL 413.2□□□□□ -0.39e-6■■■■■ 87.9
SF3B1O75533 PSME3-213ENST00000592169 826 ntTSL 3 BASIC13.12□□□□□ -0.319e-6■■■■■ 87.9
SF3B1O75533 NAPG-203ENST00000580483 1516 ntTSL 313.03□□□□□ -0.329e-6■■■■■ 87.9
SF3B1O75533 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.349e-6■■■■■ 87.9
SF3B1O75533 SDHA-216ENST00000514027 2209 ntTSL 212.81□□□□□ -0.364e-6■■■■■ 87.9
SF3B1O75533 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.394e-6■■■■■ 87.9
SF3B1O75533 SNX8-205ENST00000447136 583 ntTSL 312.35□□□□□ -0.439e-6■■■■■ 87.9
SF3B1O75533 CLASRP-212ENST00000588936 590 ntTSL 412.3□□□□□ -0.449e-6■■■■■ 87.9
SF3B1O75533 SLC5A6-217ENST00000488743 3174 ntTSL 212.13□□□□□ -0.479e-6■■■■■ 87.9
Retrieved 100 of 46,956 protein–RNA pairs in 1582.6 ms