RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 NISCHQ9Y2I1 1504 aa36.95■■■■□ 3.5
SDC3-203ENST00000471567 CCDC180Q9P1Z9 1646 aa32.79■■■□□ 2.84
SDC3-203ENST00000471567 ABCC9O60706 1549 aa31.98■■■□□ 2.71
SDC3-203ENST00000471567 NACADO15069 1562 aa30.84■■■□□ 2.53
SDC3-203ENST00000471567 RB1CC1Q8TDY2 1594 aa30.83■■■□□ 2.53
SDC3-203ENST00000471567 DCAF8L2P0C7V8 631 aa30.82■■■□□ 2.52
SDC3-203ENST00000471567 ZCCHC6Q5VYS8 1495 aaKnown RBP30.78■■■□□ 2.52
SDC3-203ENST00000471567 MYO15BQ96JP2 1530 aa30.73■■■□□ 2.51
SDC3-203ENST00000471567 DCAF1Q9Y4B6 1507 aa30.61■■■□□ 2.49
SDC3-203ENST00000471567 UNC13AQ9UPW8 1703 aa30.06■■■□□ 2.4
SDC3-203ENST00000471567 PABPN1Q86U42 306 aaKnown RBP eCLIP29.91■■■□□ 2.38
SDC3-203ENST00000471567 SCRIBQ14160 1630 aa29.88■■■□□ 2.37
SDC3-203ENST00000471567 BICRAQ9NZM4 1560 aa29.87■■■□□ 2.37
SDC3-203ENST00000471567 SHROOM4Q9ULL8 1493 aa29.64■■■□□ 2.34
SDC3-203ENST00000471567 DNAJC5BQ9UF47 199 aa29.29■■■□□ 2.28
SDC3-203ENST00000471567 EIF4G1Q04637 1599 aaKnown RBP29.09■■■□□ 2.25
SDC3-203ENST00000471567 CC2D2AQ9P2K1 1620 aa28.94■■■□□ 2.22
SDC3-203ENST00000471567 CECR2Q9BXF3 1484 aa28.75■■■□□ 2.19
SDC3-203ENST00000471567 BAZ1AQ9NRL2 1556 aaPredicted RBP28.62■■■□□ 2.17
SDC3-203ENST00000471567 SMARCA4P51532 1647 aa28.62■■■□□ 2.17
SDC3-203ENST00000471567 NCAPD3P42695 1498 aa28.47■■■□□ 2.15
SDC3-203ENST00000471567 ATAD2BQ9ULI0 1458 aa28.47■■■□□ 2.15
SDC3-203ENST00000471567 SMARCA2P51531 1590 aa28.45■■■□□ 2.14
SDC3-203ENST00000471567 MROH2BQ7Z745 1585 aa28.45■■■□□ 2.14
SDC3-203ENST00000471567 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
SDC3-203ENST00000471567 HMGXB3Q12766 1538 aa28.31■■■□□ 2.12
SDC3-203ENST00000471567 BAZ1BQ9UIG0 1483 aaKnown RBP28.23■■■□□ 2.11
SDC3-203ENST00000471567 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
SDC3-203ENST00000471567 WIZO95785 1651 aa28.12■■■□□ 2.09
SDC3-203ENST00000471567 TOP2AP11388 1531 aaKnown RBP27.87■■■□□ 2.05
SDC3-203ENST00000471567 NESP48681 1621 aa27.69■■■□□ 2.02
SDC3-203ENST00000471567 LAMC3Q9Y6N6 1575 aa27.68■■■□□ 2.02
SDC3-203ENST00000471567 CADPSQ9ULU8 1353 aa27.64■■■□□ 2.02
SDC3-203ENST00000471567 ERCC6Q03468 1493 aa27.57■■■□□ 2
SDC3-203ENST00000471567 CCDC88BA6NC98 1476 aa27.55■■■□□ 2
SDC3-203ENST00000471567 PDS5BQ9NTI5 1447 aa27.51■■□□□ 1.99
SDC3-203ENST00000471567 SUPT5HO00267 1087 aaKnown RBP27.51■■□□□ 1.99
SDC3-203ENST00000471567 CFTRP13569 1480 aa27.49■■□□□ 1.99
SDC3-203ENST00000471567 KIF21AQ7Z4S6 1674 aa27.34■■□□□ 1.97
SDC3-203ENST00000471567 CUX2O14529 1486 aa27.29■■□□□ 1.96
SDC3-203ENST00000471567 FANCD2Q9BXW9 1451 aa27.29■■□□□ 1.96
SDC3-203ENST00000471567 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
SDC3-203ENST00000471567 THOC2Q8NI27 1593 aaKnown RBP27.25■■□□□ 1.95
SDC3-203ENST00000471567 PRDM2Q13029 1718 aa27.22■■□□□ 1.95
SDC3-203ENST00000471567 MRC2Q9UBG0 1479 aa27.2■■□□□ 1.95
SDC3-203ENST00000471567 WDR62O43379 1518 aa27.1■■□□□ 1.93
SDC3-203ENST00000471567 URB2Q14146 1524 aaKnown RBP27■■□□□ 1.91
SDC3-203ENST00000471567 ABCC8Q09428 1581 aa26.92■■□□□ 1.9
SDC3-203ENST00000471567 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
SDC3-203ENST00000471567 DNMBPQ6XZF7 1577 aa26.84■■□□□ 1.89
SDC3-203ENST00000471567 IFT140Q96RY7 1462 aa26.7■■□□□ 1.87
SDC3-203ENST00000471567 CUX1P39880 1505 aa26.68■■□□□ 1.86
SDC3-203ENST00000471567 POLA1P09884 1462 aaPredicted RBP26.64■■□□□ 1.86
SDC3-203ENST00000471567 FGD5Q6ZNL6 1462 aa26.58■■□□□ 1.85
SDC3-203ENST00000471567 WRNQ14191 1432 aaPredicted RBP eCLIP26.57■■□□□ 1.84
SDC3-203ENST00000471567 SOGA1O94964 1423 aa26.56■■□□□ 1.84
SDC3-203ENST00000471567 TARBP1Q13395 1621 aaKnown RBP26.55■■□□□ 1.84
SDC3-203ENST00000471567 ZNF608Q9ULD9 1512 aaPredicted RBP26.53■■□□□ 1.84
SDC3-203ENST00000471567 RAD54L2Q9Y4B4 1467 aa26.51■■□□□ 1.83
SDC3-203ENST00000471567 TOP2BQ02880 1626 aa26.48■■□□□ 1.83
SDC3-203ENST00000471567 BIVM-ERCC5R4GMW8 1640 aa26.47■■□□□ 1.83
SDC3-203ENST00000471567 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
SDC3-203ENST00000471567 EIF4G3O43432 1585 aaKnown RBP26.41■■□□□ 1.82
SDC3-203ENST00000471567 AQRO60306 1485 aaKnown RBP eCLIP26.41■■□□□ 1.82
SDC3-203ENST00000471567 WDR97A6NE52 1622 aa26.39■■□□□ 1.82
SDC3-203ENST00000471567 TDRD9Q8NDG6 1382 aaKnown RBP26.38■■□□□ 1.81
SDC3-203ENST00000471567 ABCA10Q8WWZ4 1543 aa26.36■■□□□ 1.81
SDC3-203ENST00000471567 DNAJC5Q9H3Z4 198 aa26.36■■□□□ 1.81
SDC3-203ENST00000471567 GAPVD1Q14C86 1478 aa26.24■■□□□ 1.79
SDC3-203ENST00000471567 GRIN2BQ13224 1484 aa26.23■■□□□ 1.79
SDC3-203ENST00000471567 ABCA5Q8WWZ7 1642 aa26.21■■□□□ 1.79
SDC3-203ENST00000471567 OSCARQ8IYS5 282 aa26.2■■□□□ 1.78
SDC3-203ENST00000471567 SNAPC4Q5SXM2 1469 aa26.16■■□□□ 1.78
SDC3-203ENST00000471567 MAGI1Q96QZ7 1491 aaPredicted RBP26.16■■□□□ 1.78
SDC3-203ENST00000471567 PBRM1Q86U86 1689 aa26.12■■□□□ 1.77
SDC3-203ENST00000471567 FBLN2P98095 1184 aa26.07■■□□□ 1.76
SDC3-203ENST00000471567 SYNJ2O15056 1496 aa26.05■■□□□ 1.76
SDC3-203ENST00000471567 CHMP7Q8WUX9 453 aaPredicted RBP26.05■■□□□ 1.76
SDC3-203ENST00000471567 CHD1O14646 1710 aa26.05■■□□□ 1.76
SDC3-203ENST00000471567 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
SDC3-203ENST00000471567 KIF27Q86VH2 1401 aa26.03■■□□□ 1.76
SDC3-203ENST00000471567 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
SDC3-203ENST00000471567 FHAD1B1AJZ9 1412 aa25.97■■□□□ 1.75
SDC3-203ENST00000471567 ADAMTS12P58397 1594 aa25.95■■□□□ 1.74
SDC3-203ENST00000471567 IGF1RP08069 1367 aa25.92■■□□□ 1.74
SDC3-203ENST00000471567 GRIN2AQ12879 1464 aa25.88■■□□□ 1.73
SDC3-203ENST00000471567 CLASP1Q7Z460 1538 aa25.81■■□□□ 1.72
SDC3-203ENST00000471567 CUL7Q14999 1698 aa25.8■■□□□ 1.72
SDC3-203ENST00000471567 NUP160Q12769 1436 aa25.78■■□□□ 1.72
SDC3-203ENST00000471567 CHIC1Q5VXU3 224 aa25.76■■□□□ 1.71
SDC3-203ENST00000471567 CARMIL1Q5VZK9 1371 aa25.76■■□□□ 1.71
SDC3-203ENST00000471567 RUSC2Q8N2Y8 1516 aa25.76■■□□□ 1.71
SDC3-203ENST00000471567 CEP170Q5SW79 1584 aa25.72■■□□□ 1.71
SDC3-203ENST00000471567 ARHGEF11O15085 1522 aa25.71■■□□□ 1.71
SDC3-203ENST00000471567 RIMBP3CA6NJZ7 1639 aa25.69■■□□□ 1.7
SDC3-203ENST00000471567 RIMBP3BA6NNM3 1639 aa25.69■■□□□ 1.7
SDC3-203ENST00000471567 RIMBP3Q9UFD9 1639 aa25.69■■□□□ 1.7
SDC3-203ENST00000471567 EEA1Q15075 1411 aa25.61■■□□□ 1.69
SDC3-203ENST00000471567 RAPGEF2Q9Y4G8 1499 aa25.6■■□□□ 1.69
SDC3-203ENST00000471567 KIAA0586Q9BVV6 1533 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms