RNA–Protein interactions for RNA: ENST00000543428.5

PSME3-204, Transcript of proteasome activator subunit 3, humanhuman

TSL 2

Gene PSME3, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSME3-204ENST00000543428 NISCHQ9Y2I1 1504 aa52.94■■■■■ 6.07
PSME3-204ENST00000543428 CCDC180Q9P1Z9 1646 aa47.33■■■■■ 5.17
PSME3-204ENST00000543428 ABCC9O60706 1549 aa46.95■■■■■ 5.11
PSME3-204ENST00000543428 RB1CC1Q8TDY2 1594 aa44.88■■■■■ 4.78
PSME3-204ENST00000543428 NACADO15069 1562 aa44.65■■■■■ 4.74
PSME3-204ENST00000543428 DCAF8L2P0C7V8 631 aa44.65■■■■■ 4.74
PSME3-204ENST00000543428 MYO15BQ96JP2 1530 aa44.14■■■■■ 4.66
PSME3-204ENST00000543428 ZCCHC6Q5VYS8 1495 aaKnown RBP43.95■■■■■ 4.63
PSME3-204ENST00000543428 UNC13AQ9UPW8 1703 aa43.82■■■■■ 4.61
PSME3-204ENST00000543428 PABPN1Q86U42 306 aaKnown RBP eCLIP43.79■■■■■ 4.6
PSME3-204ENST00000543428 DCAF1Q9Y4B6 1507 aa43.73■■■■■ 4.59
PSME3-204ENST00000543428 DNAJC5BQ9UF47 199 aa43.59■■■■■ 4.57
PSME3-204ENST00000543428 BICRAQ9NZM4 1560 aa43.48■■■■■ 4.55
PSME3-204ENST00000543428 SCRIBQ14160 1630 aa43.19■■■■■ 4.51
PSME3-204ENST00000543428 SHROOM4Q9ULL8 1493 aa42.98■■■■■ 4.47
PSME3-204ENST00000543428 EIF4G1Q04637 1599 aaKnown RBP42.42■■■■■ 4.38
PSME3-204ENST00000543428 CC2D2AQ9P2K1 1620 aa42.42■■■■■ 4.38
PSME3-204ENST00000543428 CECR2Q9BXF3 1484 aa42.24■■■■■ 4.35
PSME3-204ENST00000543428 SMARCA4P51532 1647 aa41.22■■■■■ 4.19
PSME3-204ENST00000543428 NCAPD3P42695 1498 aa41.19■■■■■ 4.18
PSME3-204ENST00000543428 ATAD2BQ9ULI0 1458 aa41.13■■■■■ 4.17
PSME3-204ENST00000543428 BAZ1AQ9NRL2 1556 aaPredicted RBP41.09■■■■■ 4.17
PSME3-204ENST00000543428 SMARCA2P51531 1590 aa41.08■■■■■ 4.17
PSME3-204ENST00000543428 HMGXB3Q12766 1538 aa40.93■■■■■ 4.14
PSME3-204ENST00000543428 BAZ1BQ9UIG0 1483 aaKnown RBP40.81■■■■■ 4.12
PSME3-204ENST00000543428 MROH2BQ7Z745 1585 aa40.79■■■■■ 4.12
PSME3-204ENST00000543428 PEG3Q9GZU2 1588 aa40.76■■■■■ 4.12
PSME3-204ENST00000543428 ERCC6Q03468 1493 aa40.57■■■■■ 4.08
PSME3-204ENST00000543428 NESP48681 1621 aa40.42■■■■■ 4.06
PSME3-204ENST00000543428 WIZO95785 1651 aa40.34■■■■■ 4.05
PSME3-204ENST00000543428 CUX2O14529 1486 aa40.27■■■■■ 4.04
PSME3-204ENST00000543428 LAMC3Q9Y6N6 1575 aa40.23■■■■■ 4.03
PSME3-204ENST00000543428 RSF1Q96T23 1441 aaPredicted RBP40.1■■■■■ 4.01
PSME3-204ENST00000543428 PDS5BQ9NTI5 1447 aa40.01■■■■■ 4
PSME3-204ENST00000543428 CADPSQ9ULU8 1353 aa39.99■■■■□ 3.99
PSME3-204ENST00000543428 KIF21AQ7Z4S6 1674 aa39.93■■■■□ 3.98
PSME3-204ENST00000543428 THOC2Q8NI27 1593 aaKnown RBP39.91■■■■□ 3.98
PSME3-204ENST00000543428 TOP2AP11388 1531 aaKnown RBP39.86■■■■□ 3.97
PSME3-204ENST00000543428 DNAJC5Q9H3Z4 198 aa39.76■■■■□ 3.96
PSME3-204ENST00000543428 MRC2Q9UBG0 1479 aa39.62■■■■□ 3.93
PSME3-204ENST00000543428 CFTRP13569 1480 aa39.6■■■■□ 3.93
PSME3-204ENST00000543428 CEP164Q9UPV0 1460 aa39.57■■■■□ 3.93
PSME3-204ENST00000543428 FANCD2Q9BXW9 1451 aa39.55■■■■□ 3.92
PSME3-204ENST00000543428 WDR62O43379 1518 aa39.47■■■■□ 3.91
PSME3-204ENST00000543428 CCDC88BA6NC98 1476 aa39.4■■■■□ 3.9
PSME3-204ENST00000543428 PRDM2Q13029 1718 aa39.28■■■■□ 3.88
PSME3-204ENST00000543428 URB2Q14146 1524 aaKnown RBP39.16■■■■□ 3.86
PSME3-204ENST00000543428 TOPBP1Q92547 1522 aa38.84■■■■□ 3.81
PSME3-204ENST00000543428 ABCC8Q09428 1581 aa38.82■■■■□ 3.8
PSME3-204ENST00000543428 SUPT5HO00267 1087 aaKnown RBP38.77■■■■□ 3.8
PSME3-204ENST00000543428 IFT140Q96RY7 1462 aa38.75■■■■□ 3.79
PSME3-204ENST00000543428 DNMBPQ6XZF7 1577 aa38.74■■■■□ 3.79
PSME3-204ENST00000543428 ZNF608Q9ULD9 1512 aaPredicted RBP38.62■■■■□ 3.77
PSME3-204ENST00000543428 OSCARQ8IYS5 282 aa38.56■■■■□ 3.76
PSME3-204ENST00000543428 POLA1P09884 1462 aaPredicted RBP38.46■■■■□ 3.75
PSME3-204ENST00000543428 EIF4G3O43432 1585 aaKnown RBP38.44■■■■□ 3.74
PSME3-204ENST00000543428 TARBP1Q13395 1621 aaKnown RBP38.43■■■■□ 3.74
PSME3-204ENST00000543428 AQRO60306 1485 aaKnown RBP eCLIP38.35■■■■□ 3.734e-7■■■■□ 21.8
PSME3-204ENST00000543428 SOGA1O94964 1423 aa38.33■■■■□ 3.73
PSME3-204ENST00000543428 RAD54L2Q9Y4B4 1467 aa38.32■■■■□ 3.72
PSME3-204ENST00000543428 CUX1P39880 1505 aa38.31■■■■□ 3.72
PSME3-204ENST00000543428 FGD5Q6ZNL6 1462 aa38.29■■■■□ 3.72
PSME3-204ENST00000543428 TRIM41Q8WV44 630 aa38.29■■■■□ 3.72
PSME3-204ENST00000543428 TDRD9Q8NDG6 1382 aaKnown RBP38.19■■■■□ 3.7
PSME3-204ENST00000543428 FBLN2P98095 1184 aa38.11■■■■□ 3.69
PSME3-204ENST00000543428 CHD1O14646 1710 aa38.09■■■■□ 3.69
PSME3-204ENST00000543428 WDR97A6NE52 1622 aa38.09■■■■□ 3.69
PSME3-204ENST00000543428 SNAPC4Q5SXM2 1469 aa37.97■■■■□ 3.67
PSME3-204ENST00000543428 RIMBP3CA6NJZ7 1639 aa37.97■■■■□ 3.67
PSME3-204ENST00000543428 RIMBP3BA6NNM3 1639 aa37.97■■■■□ 3.67
PSME3-204ENST00000543428 RIMBP3Q9UFD9 1639 aa37.97■■■■□ 3.67
PSME3-204ENST00000543428 GRIN2BQ13224 1484 aa37.94■■■■□ 3.66
PSME3-204ENST00000543428 MAGI1Q96QZ7 1491 aaPredicted RBP37.9■■■■□ 3.66
PSME3-204ENST00000543428 ARHGEF11O15085 1522 aa37.88■■■■□ 3.65
PSME3-204ENST00000543428 CHMP7Q8WUX9 453 aaPredicted RBP37.87■■■■□ 3.65
PSME3-204ENST00000543428 GAPVD1Q14C86 1478 aa37.87■■■■□ 3.65
PSME3-204ENST00000543428 ABCA10Q8WWZ4 1543 aa37.87■■■■□ 3.65
PSME3-204ENST00000543428 WRNQ14191 1432 aaPredicted RBP eCLIP37.87■■■■□ 3.65
PSME3-204ENST00000543428 TOP2BQ02880 1626 aa37.82■■■■□ 3.64
PSME3-204ENST00000543428 PBRM1Q86U86 1689 aa37.82■■■■□ 3.64
PSME3-204ENST00000543428 BIVM-ERCC5R4GMW8 1640 aa37.81■■■■□ 3.64
PSME3-204ENST00000543428 SYNJ1O43426 1573 aa37.78■■■■□ 3.64
PSME3-204ENST00000543428 ABCA5Q8WWZ7 1642 aa37.76■■■■□ 3.64
PSME3-204ENST00000543428 SYNJ2O15056 1496 aa37.76■■■■□ 3.63
PSME3-204ENST00000543428 CYB5RLQ6IPT4 315 aa37.64■■■■□ 3.62
PSME3-204ENST00000543428 CLASP1Q7Z460 1538 aa37.61■■■■□ 3.61
PSME3-204ENST00000543428 ARAP1Q96P48 1450 aa37.52■■■■□ 3.6
PSME3-204ENST00000543428 ADAMTS12P58397 1594 aa37.46■■■■□ 3.59
PSME3-204ENST00000543428 GRIN2AQ12879 1464 aa37.44■■■■□ 3.58
PSME3-204ENST00000543428 ERICH3Q5RHP9 1530 aa37.41■■■■□ 3.58
PSME3-204ENST00000543428 FHAD1B1AJZ9 1412 aa37.4■■■■□ 3.58
PSME3-204ENST00000543428 NUP160Q12769 1436 aa37.27■■■■□ 3.56
PSME3-204ENST00000543428 CEP170Q5SW79 1584 aa37.26■■■■□ 3.56
PSME3-204ENST00000543428 KIF27Q86VH2 1401 aa37.14■■■■□ 3.54
PSME3-204ENST00000543428 TRHP20396 242 aaPredicted RBP37.13■■■■□ 3.53
PSME3-204ENST00000543428 ERCC6L2Q5T890 1561 aa37.07■■■■□ 3.52
PSME3-204ENST00000543428 SHROOM2Q13796 1616 aa37.05■■■■□ 3.52
PSME3-204ENST00000543428 IGF1RP08069 1367 aa37.03■■■■□ 3.52
PSME3-204ENST00000543428 CUL7Q14999 1698 aa36.98■■■■□ 3.51
PSME3-204ENST00000543428 JPH4Q96JJ6 628 aa36.95■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms