RNA–Protein interactions for RNA: ENST00000514027.5

SDHA-216, Transcript of succinate dehydrogenase complex flavoprotein subunit A, humanhuman

TSL 2

Gene SDHA, Length 2,209 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHA-216ENST00000514027 NISCHQ9Y2I1 1504 aa26.22■■□□□ 1.79
SDHA-216ENST00000514027 CCDC180Q9P1Z9 1646 aa22.38■■□□□ 1.17
SDHA-216ENST00000514027 SHROOM4Q9ULL8 1493 aa22.34■■□□□ 1.17
SDHA-216ENST00000514027 ZCCHC6Q5VYS8 1495 aaKnown RBP22.17■■□□□ 1.14
SDHA-216ENST00000514027 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
SDHA-216ENST00000514027 SUPT5HO00267 1087 aaKnown RBP21.84■■□□□ 1.09
SDHA-216ENST00000514027 DCAF1Q9Y4B6 1507 aa21.49■■□□□ 1.03
SDHA-216ENST00000514027 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
SDHA-216ENST00000514027 MYO15BQ96JP2 1530 aa21.04■□□□□ 0.96
SDHA-216ENST00000514027 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
SDHA-216ENST00000514027 ABCC9O60706 1549 aa20.93■□□□□ 0.94
SDHA-216ENST00000514027 NACADO15069 1562 aa20.7■□□□□ 0.9
SDHA-216ENST00000514027 RSF1Q96T23 1441 aaPredicted RBP20.69■□□□□ 0.9
SDHA-216ENST00000514027 PELP1Q8IZL8 1130 aaKnown RBP20.63■□□□□ 0.89
SDHA-216ENST00000514027 RB1CC1Q8TDY2 1594 aa20.53■□□□□ 0.88
SDHA-216ENST00000514027 LOC105371045A0A1W2PR82 267 aa20.51■□□□□ 0.87
SDHA-216ENST00000514027 CECR2Q9BXF3 1484 aa20.47■□□□□ 0.87
SDHA-216ENST00000514027 PCGF6Q9BYE7 350 aa20.39■□□□□ 0.86
SDHA-216ENST00000514027 MROH2BQ7Z745 1585 aa20.39■□□□□ 0.86
SDHA-216ENST00000514027 HRCP23327 699 aa20.38■□□□□ 0.85
SDHA-216ENST00000514027 TRIM41Q8WV44 630 aa20.34■□□□□ 0.85
SDHA-216ENST00000514027 WIZO95785 1651 aa20.31■□□□□ 0.84
SDHA-216ENST00000514027 FAM9AQ8IZU1 332 aaPredicted RBP20.2■□□□□ 0.82
SDHA-216ENST00000514027 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
SDHA-216ENST00000514027 UNC13AQ9UPW8 1703 aa20.17■□□□□ 0.82
SDHA-216ENST00000514027 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
SDHA-216ENST00000514027 MYT1Q01538 1121 aa20.04■□□□□ 0.8
SDHA-216ENST00000514027 SMARCA4P51532 1647 aa20.03■□□□□ 0.8
SDHA-216ENST00000514027 TRIM26Q12899 539 aaPredicted RBP20.01■□□□□ 0.79
SDHA-216ENST00000514027 TOP2AP11388 1531 aaKnown RBP19.97■□□□□ 0.79
SDHA-216ENST00000514027 EIF4G1Q04637 1599 aaKnown RBP19.95■□□□□ 0.78
SDHA-216ENST00000514027 PPARGC1BQ86YN6 1023 aaKnown RBP19.91■□□□□ 0.78
SDHA-216ENST00000514027 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
SDHA-216ENST00000514027 CCDC88BA6NC98 1476 aa19.87■□□□□ 0.77
SDHA-216ENST00000514027 BICRAQ9NZM4 1560 aa19.86■□□□□ 0.77
SDHA-216ENST00000514027 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
SDHA-216ENST00000514027 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
SDHA-216ENST00000514027 SLC24A1O60721 1099 aa19.67■□□□□ 0.74
SDHA-216ENST00000514027 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
SDHA-216ENST00000514027 SCAF1Q9H7N4 1312 aaKnown RBP19.59■□□□□ 0.73
SDHA-216ENST00000514027 SOGA1O94964 1423 aa19.58■□□□□ 0.72
SDHA-216ENST00000514027 ZEB1P37275 1124 aaPredicted RBP19.51■□□□□ 0.71
SDHA-216ENST00000514027 ATAD2BQ9ULI0 1458 aa19.51■□□□□ 0.71
SDHA-216ENST00000514027 BAZ1BQ9UIG0 1483 aaKnown RBP19.5■□□□□ 0.71
SDHA-216ENST00000514027 RUSC2Q8N2Y8 1516 aa19.48■□□□□ 0.71
SDHA-216ENST00000514027 WRNQ14191 1432 aaPredicted RBP eCLIP19.48■□□□□ 0.71
SDHA-216ENST00000514027 CEP162Q5TB80 1403 aa19.46■□□□□ 0.71
SDHA-216ENST00000514027 EEA1Q15075 1411 aa19.45■□□□□ 0.7
SDHA-216ENST00000514027 CSRNP3Q8WYN3 585 aa19.44■□□□□ 0.7
SDHA-216ENST00000514027 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
SDHA-216ENST00000514027 TTBK1Q5TCY1 1321 aaPredicted RBP19.4■□□□□ 0.7
SDHA-216ENST00000514027 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
SDHA-216ENST00000514027 TNIKQ9UKE5 1360 aa19.39■□□□□ 0.7
SDHA-216ENST00000514027 GOLGA3Q08378 1498 aa19.35■□□□□ 0.69
SDHA-216ENST00000514027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.27■□□□□ 0.67
SDHA-216ENST00000514027 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
SDHA-216ENST00000514027 CCER1Q8TC90 406 aaPredicted RBP19.23■□□□□ 0.67
SDHA-216ENST00000514027 KIF21BO75037 1637 aa19.22■□□□□ 0.67
SDHA-216ENST00000514027 TOP2BQ02880 1626 aa19.16■□□□□ 0.66
SDHA-216ENST00000514027 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
SDHA-216ENST00000514027 NCAPD3P42695 1498 aa19.12■□□□□ 0.65
SDHA-216ENST00000514027 CLIP1P30622 1438 aa19.12■□□□□ 0.65
SDHA-216ENST00000514027 RAPGEF2Q9Y4G8 1499 aa19.11■□□□□ 0.65
SDHA-216ENST00000514027 RANGAP1P46060 587 aaPredicted RBP19.1■□□□□ 0.65
SDHA-216ENST00000514027 BIVM-ERCC5R4GMW8 1640 aa19.1■□□□□ 0.65
SDHA-216ENST00000514027 VPS8Q8N3P4 1428 aa19.01■□□□□ 0.63
SDHA-216ENST00000514027 CUX1P39880 1505 aa19■□□□□ 0.63
SDHA-216ENST00000514027 APLP2Q06481 763 aa18.97■□□□□ 0.63
SDHA-216ENST00000514027 CFTRP13569 1480 aa18.96■□□□□ 0.63
SDHA-216ENST00000514027 CC2D2AQ9P2K1 1620 aa18.94■□□□□ 0.62
SDHA-216ENST00000514027 ACIN1Q9UKV3 1341 aaKnown RBP18.94■□□□□ 0.62
SDHA-216ENST00000514027 ERICH3Q5RHP9 1530 aa18.92■□□□□ 0.62
SDHA-216ENST00000514027 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
SDHA-216ENST00000514027 PRXQ9BXM0 1461 aa18.91■□□□□ 0.62
SDHA-216ENST00000514027 KIF27Q86VH2 1401 aa18.89■□□□□ 0.61
SDHA-216ENST00000514027 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
SDHA-216ENST00000514027 NEUROD1Q13562 356 aa18.82■□□□□ 0.6
SDHA-216ENST00000514027 ARAP1Q96P48 1450 aa18.81■□□□□ 0.6
SDHA-216ENST00000514027 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.6
SDHA-216ENST00000514027 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
SDHA-216ENST00000514027 DIEXFQ68CQ4 756 aaKnown RBP18.75■□□□□ 0.59
SDHA-216ENST00000514027 CUX2O14529 1486 aa18.75■□□□□ 0.59
SDHA-216ENST00000514027 FGD5Q6ZNL6 1462 aa18.69■□□□□ 0.58
SDHA-216ENST00000514027 KANK4Q5T7N3 995 aaPredicted RBP18.68■□□□□ 0.58
SDHA-216ENST00000514027 ARHGAP35Q9NRY4 1499 aa18.66■□□□□ 0.58
SDHA-216ENST00000514027 IGF1RP08069 1367 aa18.65■□□□□ 0.58
SDHA-216ENST00000514027 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
SDHA-216ENST00000514027 ZNF316A6NFI3 1004 aaPredicted RBP18.63■□□□□ 0.57
SDHA-216ENST00000514027 CARMIL1Q5VZK9 1371 aa18.6■□□□□ 0.57
SDHA-216ENST00000514027 CENPBP07199 599 aaPredicted RBP18.6■□□□□ 0.57
SDHA-216ENST00000514027 BCL11AQ9H165 835 aa18.59■□□□□ 0.57
SDHA-216ENST00000514027 NESP48681 1621 aa18.54■□□□□ 0.56
SDHA-216ENST00000514027 RRBP1Q9P2E9 1410 aaKnown RBP18.52■□□□□ 0.56
SDHA-216ENST00000514027 DNMBPQ6XZF7 1577 aa18.52■□□□□ 0.56
SDHA-216ENST00000514027 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.55
SDHA-216ENST00000514027 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
SDHA-216ENST00000514027 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
SDHA-216ENST00000514027 ITGAEP38570 1179 aa18.49■□□□□ 0.55
SDHA-216ENST00000514027 DHX57Q6P158 1386 aaKnown RBP18.48■□□□□ 0.55
SDHA-216ENST00000514027 CCNB3Q8WWL7 1395 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms