Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 TP53TG3HP-202ENST00000569755 579 ntBASIC11.83□□□□□ -0.52
CCDC140Q96MF4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CCDC140Q96MF4 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RNU1-114P-201ENST00000365297 166 ntBASIC11.82□□□□□ -0.52
CCDC140Q96MF4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 NUS1P3-201ENST00000423502 862 ntBASIC11.82□□□□□ -0.52
CCDC140Q96MF4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 AC005252.2-201ENST00000624630 1141 ntBASIC11.82□□□□□ -0.52
CCDC140Q96MF4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CCDC140Q96MF4 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CCDC140Q96MF4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms