Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA9Q9Y5G4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA9Q9Y5G4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA9Q9Y5G4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA9Q9Y5G4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA9Q9Y5G4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA9Q9Y5G4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 AC090877.2-201ENST00000558441 1738 ntBASIC21.58■■□□□ 1.04
PCDHGA9Q9Y5G4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA9Q9Y5G4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA9Q9Y5G4 PBX2P1-201ENST00000493219 1291 ntBASIC21.57■■□□□ 1.04
PCDHGA9Q9Y5G4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA9Q9Y5G4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA9Q9Y5G4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA9Q9Y5G4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA9Q9Y5G4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 AC142381.2-201ENST00000566120 298 ntBASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PCDHGA9Q9Y5G4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA9Q9Y5G4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA9Q9Y5G4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA9Q9Y5G4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA9Q9Y5G4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHGA9Q9Y5G4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHGA9Q9Y5G4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.52■■□□□ 1.03
PCDHGA9Q9Y5G4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHGA9Q9Y5G4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PCDHGA9Q9Y5G4 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA9Q9Y5G4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.51■■□□□ 1.03
PCDHGA9Q9Y5G4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 UNC93B3-201ENST00000308076 687 ntBASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA9Q9Y5G4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 ZNRF2P3-201ENST00000424200 374 ntBASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 SRD5A1P1-201ENST00000442297 786 ntBASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA9Q9Y5G4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms