Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD4Q6ZW05 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD4Q6ZW05 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PTCHD4Q6ZW05 RAP2CP1-202ENST00000605179 643 ntBASIC21.15■□□□□ 0.98
PTCHD4Q6ZW05 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.14■□□□□ 0.98
PTCHD4Q6ZW05 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTCHD4Q6ZW05 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD4Q6ZW05 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PTCHD4Q6ZW05 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD4Q6ZW05 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 AC026202.3-201ENST00000600805 1127 ntBASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.11■□□□□ 0.97
PTCHD4Q6ZW05 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD4Q6ZW05 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD4Q6ZW05 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.08■□□□□ 0.97
PTCHD4Q6ZW05 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD4Q6ZW05 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PTCHD4Q6ZW05 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTCHD4Q6ZW05 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PTCHD4Q6ZW05 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTCHD4Q6ZW05 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD4Q6ZW05 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms