Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.69■■■□□ 2.18
COL4A1P02462 DUSP8P4-201ENST00000399538 1761 ntBASIC28.69■■■□□ 2.18
COL4A1P02462 UNC93B3-201ENST00000308076 687 ntBASIC28.68■■■□□ 2.18
COL4A1P02462 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC28.68■■■□□ 2.18
COL4A1P02462 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
COL4A1P02462 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
COL4A1P02462 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
COL4A1P02462 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
COL4A1P02462 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC28.67■■■□□ 2.18
COL4A1P02462 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.67■■■□□ 2.18
COL4A1P02462 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
COL4A1P02462 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.67■■■□□ 2.18
COL4A1P02462 AC024257.2-201ENST00000549699 147 ntBASIC28.67■■■□□ 2.18
COL4A1P02462 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC28.67■■■□□ 2.18
COL4A1P02462 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC28.67■■■□□ 2.18
COL4A1P02462 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.67■■■□□ 2.18
COL4A1P02462 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
COL4A1P02462 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.67■■■□□ 2.18
COL4A1P02462 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
COL4A1P02462 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
COL4A1P02462 PBX2P1-201ENST00000493219 1291 ntBASIC28.66■■■□□ 2.18
COL4A1P02462 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC28.66■■■□□ 2.18
COL4A1P02462 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC28.66■■■□□ 2.18
COL4A1P02462 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
COL4A1P02462 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A1P02462 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A1P02462 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC28.65■■■□□ 2.18
COL4A1P02462 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
COL4A1P02462 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
COL4A1P02462 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A1P02462 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A1P02462 RARRES2P6-201ENST00000567333 442 ntBASIC28.64■■■□□ 2.18
COL4A1P02462 AL136162.1-201ENST00000607711 1078 ntBASIC28.64■■■□□ 2.18
COL4A1P02462 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC28.64■■■□□ 2.18
COL4A1P02462 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
COL4A1P02462 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A1P02462 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
COL4A1P02462 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.64■■■□□ 2.17
COL4A1P02462 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
COL4A1P02462 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
COL4A1P02462 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.63■■■□□ 2.17
COL4A1P02462 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL4A1P02462 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL4A1P02462 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC28.62■■■□□ 2.17
COL4A1P02462 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A1P02462 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.62■■■□□ 2.17
COL4A1P02462 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A1P02462 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A1P02462 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.61■■■□□ 2.17
COL4A1P02462 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A1P02462 GATM-206ENST00000558336 1522 ntTSL 2 BASIC28.61■■■□□ 2.17
COL4A1P02462 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A1P02462 AC135279.3-201ENST00000610945 1311 ntBASIC28.61■■■□□ 2.17
COL4A1P02462 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A1P02462 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
COL4A1P02462 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC28.61■■■□□ 2.17
COL4A1P02462 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A1P02462 AC091060.1-201ENST00000623524 1766 ntBASIC28.61■■■□□ 2.17
COL4A1P02462 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC28.61■■■□□ 2.17
COL4A1P02462 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC28.61■■■□□ 2.17
COL4A1P02462 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
COL4A1P02462 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC28.61■■■□□ 2.17
COL4A1P02462 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.6■■■□□ 2.17
COL4A1P02462 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 AC026271.2-201ENST00000428091 497 ntBASIC28.6■■■□□ 2.17
COL4A1P02462 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC28.6■■■□□ 2.17
COL4A1P02462 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL4A1P02462 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL4A1P02462 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL4A1P02462 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC28.59■■■□□ 2.17
COL4A1P02462 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL4A1P02462 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
COL4A1P02462 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
COL4A1P02462 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
COL4A1P02462 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.58■■■□□ 2.17
COL4A1P02462 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL4A1P02462 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL4A1P02462 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
COL4A1P02462 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.58■■■□□ 2.16
COL4A1P02462 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC28.58■■■□□ 2.16
COL4A1P02462 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A1P02462 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A1P02462 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A1P02462 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.57■■■□□ 2.16
COL4A1P02462 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A1P02462 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 AP001330.3-201ENST00000520123 633 ntBASIC28.56■■■□□ 2.16
COL4A1P02462 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
COL4A1P02462 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A1P02462 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A1P02462 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
COL4A1P02462 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms