Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 AC092384.3-202ENST00000564646 2873 ntBASIC15.63■□□□□ 0.09
CDH4P55283 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH4P55283 PDIA3P1-201ENST00000471856 1510 ntBASIC15.63■□□□□ 0.09
CDH4P55283 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH4P55283 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CDH4P55283 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CDH4P55283 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CDH4P55283 MIR1909-201ENST00000411312 80 ntBASIC15.62■□□□□ 0.09
CDH4P55283 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.62■□□□□ 0.09
CDH4P55283 RN7SL48P-201ENST00000579283 293 ntBASIC15.62■□□□□ 0.09
CDH4P55283 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.62■□□□□ 0.09
CDH4P55283 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 AL359258.3-201ENST00000622910 2331 ntBASIC15.62■□□□□ 0.09
CDH4P55283 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CDH4P55283 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
CDH4P55283 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.62■□□□□ 0.09
CDH4P55283 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CDH4P55283 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
CDH4P55283 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CDH4P55283 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 AC006486.2-201ENST00000624246 2199 ntBASIC15.61■□□□□ 0.09
CDH4P55283 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
CDH4P55283 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.61■□□□□ 0.09
CDH4P55283 RPL7P3-201ENST00000441388 714 ntBASIC15.61■□□□□ 0.09
CDH4P55283 AC022210.1-201ENST00000449856 793 ntBASIC15.61■□□□□ 0.09
CDH4P55283 KLF2P4-201ENST00000451959 1225 ntBASIC15.61■□□□□ 0.09
CDH4P55283 AC104989.1-201ENST00000519711 778 ntBASIC15.61■□□□□ 0.09
CDH4P55283 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.61■□□□□ 0.09
CDH4P55283 AP000812.2-201ENST00000538934 718 ntBASIC15.61■□□□□ 0.09
CDH4P55283 KRT90P-201ENST00000549264 1064 ntBASIC15.61■□□□□ 0.09
CDH4P55283 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 AC244669.2-201ENST00000612320 853 ntBASIC15.61■□□□□ 0.09
CDH4P55283 MIR6805-201ENST00000615055 62 ntBASIC15.61■□□□□ 0.09
CDH4P55283 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDH4P55283 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CDH4P55283 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH4P55283 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms