Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 ALG1L5P-201ENST00000482043 771 ntBASIC15.17■□□□□ 0.02
MKS1Q9NXB0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 AC093520.2-201ENST00000561830 333 ntBASIC15.17■□□□□ 0.02
MKS1Q9NXB0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 AL033527.5-202ENST00000641632 1098 ntBASIC15.17■□□□□ 0.02
MKS1Q9NXB0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 ELL2P1-201ENST00000413990 1906 ntBASIC15.17■□□□□ 0.02
MKS1Q9NXB0 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MKS1Q9NXB0 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC022447.6-201ENST00000515522 438 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC026150.2-201ENST00000564693 1156 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC120114.3-201ENST00000611923 658 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AF228730.6-201ENST00000641497 218 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC084121.3-201ENST00000641716 218 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 AC117489.1-201ENST00000625169 3217 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MKS1Q9NXB0 PCDHA3-202ENST00000532566 4594 ntBASIC15.16■□□□□ 0.02
MKS1Q9NXB0 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.15■□□□□ 0.02
MKS1Q9NXB0 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms