RNA–Protein interactions for RNA: ENST00000399132.5

COL25A1-203, Transcript of collagen type XXV alpha 1 chain, humanhuman

APPRIS P4 TSL 5 BASIC

Gene COL25A1, Length 2,724 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-203ENST00000399132 NISCHQ9Y2I1 1504 aa32.35■■■□□ 2.77
COL25A1-203ENST00000399132 CCDC180Q9P1Z9 1646 aa27.61■■■□□ 2.01
COL25A1-203ENST00000399132 SHROOM4Q9ULL8 1493 aa27.56■■■□□ 2
COL25A1-203ENST00000399132 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
COL25A1-203ENST00000399132 ZCCHC6Q5VYS8 1495 aaKnown RBP27.21■■□□□ 1.95
COL25A1-203ENST00000399132 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
COL25A1-203ENST00000399132 ABCC9O60706 1549 aa26.45■■□□□ 1.83
COL25A1-203ENST00000399132 DCAF1Q9Y4B6 1507 aa26.35■■□□□ 1.81
COL25A1-203ENST00000399132 SCRIBQ14160 1630 aa26.08■■□□□ 1.76
COL25A1-203ENST00000399132 MYO15BQ96JP2 1530 aa25.77■■□□□ 1.72
COL25A1-203ENST00000399132 NACADO15069 1562 aa25.73■■□□□ 1.71
COL25A1-203ENST00000399132 CHIC1Q5VXU3 224 aa25.53■■□□□ 1.68
COL25A1-203ENST00000399132 RB1CC1Q8TDY2 1594 aa25.5■■□□□ 1.67
COL25A1-203ENST00000399132 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
COL25A1-203ENST00000399132 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
COL25A1-203ENST00000399132 PABPN1Q86U42 306 aaKnown RBP eCLIP25.29■■□□□ 1.64
COL25A1-203ENST00000399132 MROH2BQ7Z745 1585 aa25.2■■□□□ 1.63
COL25A1-203ENST00000399132 UNC13AQ9UPW8 1703 aa25.09■■□□□ 1.61
COL25A1-203ENST00000399132 WIZO95785 1651 aa25.04■■□□□ 1.6
COL25A1-203ENST00000399132 LOC105371045A0A1W2PR82 267 aa24.92■■□□□ 1.58
COL25A1-203ENST00000399132 BAZ1AQ9NRL2 1556 aaPredicted RBP24.87■■□□□ 1.57
COL25A1-203ENST00000399132 TRIM41Q8WV44 630 aa24.84■■□□□ 1.57
COL25A1-203ENST00000399132 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.57
COL25A1-203ENST00000399132 FAM9AQ8IZU1 332 aaPredicted RBP24.81■■□□□ 1.56
COL25A1-203ENST00000399132 EHMT2Q96KQ7 1210 aa24.77■■□□□ 1.56
COL25A1-203ENST00000399132 SMARCA4P51532 1647 aa24.75■■□□□ 1.55
COL25A1-203ENST00000399132 TOP2AP11388 1531 aaKnown RBP24.53■■□□□ 1.52
COL25A1-203ENST00000399132 CCDC88BA6NC98 1476 aa24.52■■□□□ 1.52
COL25A1-203ENST00000399132 SMARCA2P51531 1590 aa24.42■■□□□ 1.5
COL25A1-203ENST00000399132 ABCC8Q09428 1581 aa24.35■■□□□ 1.49
COL25A1-203ENST00000399132 PCGF6Q9BYE7 350 aa24.3■■□□□ 1.48
COL25A1-203ENST00000399132 ATAD2BQ9ULI0 1458 aa24.3■■□□□ 1.48
COL25A1-203ENST00000399132 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
COL25A1-203ENST00000399132 BAZ1BQ9UIG0 1483 aaKnown RBP24.24■■□□□ 1.47
COL25A1-203ENST00000399132 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
COL25A1-203ENST00000399132 SOGA1O94964 1423 aa24.02■■□□□ 1.44
COL25A1-203ENST00000399132 PPARGC1BQ86YN6 1023 aaKnown RBP23.98■■□□□ 1.43
COL25A1-203ENST00000399132 RUSC2Q8N2Y8 1516 aa23.94■■□□□ 1.42
COL25A1-203ENST00000399132 WRNQ14191 1432 aaPredicted RBP eCLIP23.94■■□□□ 1.42
COL25A1-203ENST00000399132 NCAPD3P42695 1498 aa23.86■■□□□ 1.41
COL25A1-203ENST00000399132 SYNJ1O43426 1573 aa23.82■■□□□ 1.4
COL25A1-203ENST00000399132 UBTFP17480 764 aaKnown RBP23.81■■□□□ 1.4
COL25A1-203ENST00000399132 CSRNP3Q8WYN3 585 aa23.81■■□□□ 1.4
COL25A1-203ENST00000399132 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
COL25A1-203ENST00000399132 TTBK1Q5TCY1 1321 aaPredicted RBP23.78■■□□□ 1.4
COL25A1-203ENST00000399132 HMGXB3Q12766 1538 aa23.75■■□□□ 1.39
COL25A1-203ENST00000399132 RANGAP1P46060 587 aaPredicted RBP23.72■■□□□ 1.39
COL25A1-203ENST00000399132 HRCP23327 699 aa23.69■■□□□ 1.38
COL25A1-203ENST00000399132 CC2D2AQ9P2K1 1620 aa23.68■■□□□ 1.38
COL25A1-203ENST00000399132 PELP1Q8IZL8 1130 aaKnown RBP23.62■■□□□ 1.37
COL25A1-203ENST00000399132 CEP162Q5TB80 1403 aa23.57■■□□□ 1.36
COL25A1-203ENST00000399132 EEA1Q15075 1411 aa23.55■■□□□ 1.36
COL25A1-203ENST00000399132 CFTRP13569 1480 aa23.53■■□□□ 1.36
COL25A1-203ENST00000399132 DNAJC5BQ9UF47 199 aa23.52■■□□□ 1.36
COL25A1-203ENST00000399132 TNIKQ9UKE5 1360 aa23.49■■□□□ 1.35
COL25A1-203ENST00000399132 TOP2BQ02880 1626 aa23.49■■□□□ 1.35
COL25A1-203ENST00000399132 GOLGA3Q08378 1498 aa23.48■■□□□ 1.35
COL25A1-203ENST00000399132 CUX1P39880 1505 aa23.48■■□□□ 1.35
COL25A1-203ENST00000399132 CADPSQ9ULU8 1353 aa23.45■■□□□ 1.35
COL25A1-203ENST00000399132 RAPGEF2Q9Y4G8 1499 aa23.42■■□□□ 1.34
COL25A1-203ENST00000399132 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.34
COL25A1-203ENST00000399132 NESP48681 1621 aa23.37■■□□□ 1.33
COL25A1-203ENST00000399132 BIVM-ERCC5R4GMW8 1640 aa23.36■■□□□ 1.33
COL25A1-203ENST00000399132 CLIP1P30622 1438 aa23.27■■□□□ 1.32
COL25A1-203ENST00000399132 KIF21BO75037 1637 aa23.27■■□□□ 1.32
COL25A1-203ENST00000399132 FANCD2Q9BXW9 1451 aa23.25■■□□□ 1.31
COL25A1-203ENST00000399132 KIF27Q86VH2 1401 aa23.23■■□□□ 1.31
COL25A1-203ENST00000399132 CUX2O14529 1486 aa23.21■■□□□ 1.31
COL25A1-203ENST00000399132 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
COL25A1-203ENST00000399132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.16■■□□□ 1.3
COL25A1-203ENST00000399132 PRDM2Q13029 1718 aa23.16■■□□□ 1.3
COL25A1-203ENST00000399132 PRXQ9BXM0 1461 aa23.13■■□□□ 1.29
COL25A1-203ENST00000399132 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
COL25A1-203ENST00000399132 APLP2Q06481 763 aa23.09■■□□□ 1.29
COL25A1-203ENST00000399132 IGF1RP08069 1367 aa23.06■■□□□ 1.28
COL25A1-203ENST00000399132 VPS8Q8N3P4 1428 aa23.02■■□□□ 1.28
COL25A1-203ENST00000399132 CCER1Q8TC90 406 aaPredicted RBP23.01■■□□□ 1.27
COL25A1-203ENST00000399132 TOPBP1Q92547 1522 aa23■■□□□ 1.27
COL25A1-203ENST00000399132 ERICH3Q5RHP9 1530 aa22.99■■□□□ 1.27
COL25A1-203ENST00000399132 CARMIL1Q5VZK9 1371 aa22.98■■□□□ 1.27
COL25A1-203ENST00000399132 HNRNPUL2Q1KMD3 747 aaKnown RBP22.98■■□□□ 1.27
COL25A1-203ENST00000399132 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
COL25A1-203ENST00000399132 P3H3Q8IVL6 736 aa22.96■■□□□ 1.27
COL25A1-203ENST00000399132 DNMBPQ6XZF7 1577 aa22.94■■□□□ 1.26
COL25A1-203ENST00000399132 URB2Q14146 1524 aaKnown RBP22.93■■□□□ 1.26
COL25A1-203ENST00000399132 TDRD9Q8NDG6 1382 aaKnown RBP22.92■■□□□ 1.26
COL25A1-203ENST00000399132 ARAP1Q96P48 1450 aa22.91■■□□□ 1.26
COL25A1-203ENST00000399132 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
COL25A1-203ENST00000399132 MYT1Q01538 1121 aa22.89■■□□□ 1.26
COL25A1-203ENST00000399132 PDS5BQ9NTI5 1447 aa22.89■■□□□ 1.25
COL25A1-203ENST00000399132 ZEB1P37275 1124 aaPredicted RBP22.88■■□□□ 1.25
COL25A1-203ENST00000399132 KANK4Q5T7N3 995 aaPredicted RBP22.88■■□□□ 1.25
COL25A1-203ENST00000399132 ATP1B4Q9UN42 357 aaPredicted RBP22.86■■□□□ 1.25
COL25A1-203ENST00000399132 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.25
COL25A1-203ENST00000399132 ARHGAP35Q9NRY4 1499 aa22.82■■□□□ 1.24
COL25A1-203ENST00000399132 ABCA10Q8WWZ4 1543 aa22.8■■□□□ 1.24
COL25A1-203ENST00000399132 ITGAEP38570 1179 aa22.69■■□□□ 1.22
COL25A1-203ENST00000399132 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
COL25A1-203ENST00000399132 FHOD3Q2V2M9 1422 aa22.64■■□□□ 1.21
COL25A1-203ENST00000399132 AQRO60306 1485 aaKnown RBP eCLIP22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms