RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 NISCHQ9Y2I1 1504 aa40.53■■■■■ 4.08
LINC00404-201ENST00000418660 CCDC180Q9P1Z9 1646 aa36.16■■■■□ 3.38
LINC00404-201ENST00000418660 ABCC9O60706 1549 aa35.7■■■■□ 3.31
LINC00404-201ENST00000418660 RB1CC1Q8TDY2 1594 aa34.2■■■■□ 3.07
LINC00404-201ENST00000418660 NACADO15069 1562 aa34.1■■■■□ 3.05
LINC00404-201ENST00000418660 DCAF8L2P0C7V8 631 aa34.01■■■■□ 3.03
LINC00404-201ENST00000418660 MYO15BQ96JP2 1530 aa33.79■■■■□ 3
LINC00404-201ENST00000418660 ZCCHC6Q5VYS8 1495 aaKnown RBP33.69■■■□□ 2.98
LINC00404-201ENST00000418660 DCAF1Q9Y4B6 1507 aa33.53■■■□□ 2.96
LINC00404-201ENST00000418660 UNC13AQ9UPW8 1703 aa33.36■■■□□ 2.93
LINC00404-201ENST00000418660 PABPN1Q86U42 306 aaKnown RBP eCLIP33.32■■■□□ 2.92
LINC00404-201ENST00000418660 BICRAQ9NZM4 1560 aa33.17■■■□□ 2.9
LINC00404-201ENST00000418660 DNAJC5BQ9UF47 199 aa33.08■■■□□ 2.89
LINC00404-201ENST00000418660 SCRIBQ14160 1630 aa32.95■■■□□ 2.86
LINC00404-201ENST00000418660 SHROOM4Q9ULL8 1493 aa32.81■■■□□ 2.84
LINC00404-201ENST00000418660 EIF4G1Q04637 1599 aaKnown RBP32.32■■■□□ 2.77
LINC00404-201ENST00000418660 CC2D2AQ9P2K1 1620 aa32.27■■■□□ 2.76
LINC00404-201ENST00000418660 CECR2Q9BXF3 1484 aa32.12■■■□□ 2.73
LINC00404-201ENST00000418660 SMARCA4P51532 1647 aa31.5■■■□□ 2.63
LINC00404-201ENST00000418660 NCAPD3P42695 1498 aa31.48■■■□□ 2.63
LINC00404-201ENST00000418660 ATAD2BQ9ULI0 1458 aa31.44■■■□□ 2.62
LINC00404-201ENST00000418660 BAZ1AQ9NRL2 1556 aaPredicted RBP31.43■■■□□ 2.62
LINC00404-201ENST00000418660 SMARCA2P51531 1590 aa31.38■■■□□ 2.61
LINC00404-201ENST00000418660 HMGXB3Q12766 1538 aa31.27■■■□□ 2.6
LINC00404-201ENST00000418660 MROH2BQ7Z745 1585 aa31.22■■■□□ 2.59
LINC00404-201ENST00000418660 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
LINC00404-201ENST00000418660 BAZ1BQ9UIG0 1483 aaKnown RBP31.14■■■□□ 2.58
LINC00404-201ENST00000418660 WIZO95785 1651 aa30.86■■■□□ 2.53
LINC00404-201ENST00000418660 ERCC6Q03468 1493 aa30.8■■■□□ 2.52
LINC00404-201ENST00000418660 NESP48681 1621 aa30.79■■■□□ 2.52
LINC00404-201ENST00000418660 RSF1Q96T23 1441 aaPredicted RBP30.76■■■□□ 2.51
LINC00404-201ENST00000418660 LAMC3Q9Y6N6 1575 aa30.67■■■□□ 2.5
LINC00404-201ENST00000418660 CUX2O14529 1486 aa30.6■■■□□ 2.49
LINC00404-201ENST00000418660 CADPSQ9ULU8 1353 aa30.54■■■□□ 2.48
LINC00404-201ENST00000418660 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
LINC00404-201ENST00000418660 PDS5BQ9NTI5 1447 aa30.5■■■□□ 2.47
LINC00404-201ENST00000418660 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.45
LINC00404-201ENST00000418660 THOC2Q8NI27 1593 aaKnown RBP30.38■■■□□ 2.45
LINC00404-201ENST00000418660 CFTRP13569 1480 aa30.29■■■□□ 2.44
LINC00404-201ENST00000418660 MRC2Q9UBG0 1479 aa30.19■■■□□ 2.42
LINC00404-201ENST00000418660 CCDC88BA6NC98 1476 aa30.18■■■□□ 2.42
LINC00404-201ENST00000418660 FANCD2Q9BXW9 1451 aa30.18■■■□□ 2.42
LINC00404-201ENST00000418660 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
LINC00404-201ENST00000418660 WDR62O43379 1518 aa30.1■■■□□ 2.41
LINC00404-201ENST00000418660 DNAJC5Q9H3Z4 198 aa30.06■■■□□ 2.4
LINC00404-201ENST00000418660 PRDM2Q13029 1718 aa29.96■■■□□ 2.39
LINC00404-201ENST00000418660 URB2Q14146 1524 aaKnown RBP29.89■■■□□ 2.38
LINC00404-201ENST00000418660 SUPT5HO00267 1087 aaKnown RBP29.75■■■□□ 2.35
LINC00404-201ENST00000418660 ABCC8Q09428 1581 aa29.66■■■□□ 2.34
LINC00404-201ENST00000418660 TOPBP1Q92547 1522 aa29.66■■■□□ 2.34
LINC00404-201ENST00000418660 DNMBPQ6XZF7 1577 aa29.59■■■□□ 2.33
LINC00404-201ENST00000418660 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
LINC00404-201ENST00000418660 ZNF608Q9ULD9 1512 aaPredicted RBP29.44■■■□□ 2.3
LINC00404-201ENST00000418660 POLA1P09884 1462 aaPredicted RBP29.38■■■□□ 2.29
LINC00404-201ENST00000418660 TARBP1Q13395 1621 aaKnown RBP29.35■■■□□ 2.29
LINC00404-201ENST00000418660 CUX1P39880 1505 aa29.3■■■□□ 2.28
LINC00404-201ENST00000418660 OSCARQ8IYS5 282 aa29.3■■■□□ 2.28
LINC00404-201ENST00000418660 EIF4G3O43432 1585 aaKnown RBP29.29■■■□□ 2.28
LINC00404-201ENST00000418660 SOGA1O94964 1423 aa29.28■■■□□ 2.28
LINC00404-201ENST00000418660 FGD5Q6ZNL6 1462 aa29.26■■■□□ 2.27
LINC00404-201ENST00000418660 RAD54L2Q9Y4B4 1467 aa29.26■■■□□ 2.27
LINC00404-201ENST00000418660 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.27
LINC00404-201ENST00000418660 TDRD9Q8NDG6 1382 aaKnown RBP29.14■■■□□ 2.26
LINC00404-201ENST00000418660 WDR97A6NE52 1622 aa29.11■■■□□ 2.25
LINC00404-201ENST00000418660 WRNQ14191 1432 aaPredicted RBP eCLIP29.01■■■□□ 2.23
LINC00404-201ENST00000418660 FBLN2P98095 1184 aa28.97■■■□□ 2.23
LINC00404-201ENST00000418660 ABCA10Q8WWZ4 1543 aa28.97■■■□□ 2.23
LINC00404-201ENST00000418660 TOP2BQ02880 1626 aa28.97■■■□□ 2.23
LINC00404-201ENST00000418660 CHD1O14646 1710 aa28.97■■■□□ 2.23
LINC00404-201ENST00000418660 GRIN2BQ13224 1484 aa28.97■■■□□ 2.23
LINC00404-201ENST00000418660 BIVM-ERCC5R4GMW8 1640 aa28.96■■■□□ 2.23
LINC00404-201ENST00000418660 SNAPC4Q5SXM2 1469 aa28.95■■■□□ 2.22
LINC00404-201ENST00000418660 SYNJ1O43426 1573 aa28.93■■■□□ 2.22
LINC00404-201ENST00000418660 GAPVD1Q14C86 1478 aa28.92■■■□□ 2.22
LINC00404-201ENST00000418660 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
LINC00404-201ENST00000418660 TRIM41Q8WV44 630 aa28.91■■■□□ 2.22
LINC00404-201ENST00000418660 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
LINC00404-201ENST00000418660 CHMP7Q8WUX9 453 aaPredicted RBP28.85■■■□□ 2.21
LINC00404-201ENST00000418660 PBRM1Q86U86 1689 aa28.83■■■□□ 2.21
LINC00404-201ENST00000418660 RIMBP3CA6NJZ7 1639 aa28.81■■■□□ 2.2
LINC00404-201ENST00000418660 RIMBP3BA6NNM3 1639 aa28.81■■■□□ 2.2
LINC00404-201ENST00000418660 RIMBP3Q9UFD9 1639 aa28.81■■■□□ 2.2
LINC00404-201ENST00000418660 SYNJ2O15056 1496 aa28.81■■■□□ 2.2
LINC00404-201ENST00000418660 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
LINC00404-201ENST00000418660 CLASP1Q7Z460 1538 aa28.68■■■□□ 2.18
LINC00404-201ENST00000418660 ERICH3Q5RHP9 1530 aa28.62■■■□□ 2.17
LINC00404-201ENST00000418660 ADAMTS12P58397 1594 aa28.6■■■□□ 2.17
LINC00404-201ENST00000418660 GRIN2AQ12879 1464 aa28.59■■■□□ 2.17
LINC00404-201ENST00000418660 FHAD1B1AJZ9 1412 aa28.58■■■□□ 2.17
LINC00404-201ENST00000418660 CYB5RLQ6IPT4 315 aa28.57■■■□□ 2.16
LINC00404-201ENST00000418660 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
LINC00404-201ENST00000418660 NUP160Q12769 1436 aa28.47■■■□□ 2.15
LINC00404-201ENST00000418660 CEP170Q5SW79 1584 aa28.44■■■□□ 2.14
LINC00404-201ENST00000418660 KIF27Q86VH2 1401 aa28.43■■■□□ 2.14
LINC00404-201ENST00000418660 IGF1RP08069 1367 aa28.37■■■□□ 2.13
LINC00404-201ENST00000418660 CUL7Q14999 1698 aa28.28■■■□□ 2.12
LINC00404-201ENST00000418660 SHROOM2Q13796 1616 aa28.28■■■□□ 2.12
LINC00404-201ENST00000418660 ERCC6L2Q5T890 1561 aa28.25■■■□□ 2.11
LINC00404-201ENST00000418660 JPH4Q96JJ6 628 aa28.21■■■□□ 2.11
LINC00404-201ENST00000418660 RUSC2Q8N2Y8 1516 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms