Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RCN1P1-201ENST00000400413 996 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC12.46□□□□□ -0.41
HMGB3O15347 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HMGB3O15347 RPS15P9-201ENST00000494093 319 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 FAM86EP-206ENST00000510506 987 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 SART3-203ENST00000546611 1184 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 U1.21-201ENST00000580816 167 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 AL031055.1-201ENST00000606362 631 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 AL365330.1-201ENST00000607459 531 ntBASIC12.46□□□□□ -0.41
HMGB3O15347 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.46□□□□□ -0.41
HMGB3O15347 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HMGB3O15347 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
HMGB3O15347 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.46□□□□□ -0.42
HMGB3O15347 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.46□□□□□ -0.42
HMGB3O15347 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.46□□□□□ -0.42
HMGB3O15347 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HMGB3O15347 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
HMGB3O15347 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
HMGB3O15347 WASH6P-202ENST00000359512 1437 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 AC027601.5-201ENST00000624065 2482 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.45□□□□□ -0.42
HMGB3O15347 AC245100.5-201ENST00000452108 331 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 KRT16P4-201ENST00000453883 522 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC12.45□□□□□ -0.42
HMGB3O15347 AP002469.2-201ENST00000531724 424 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12.45□□□□□ -0.42
HMGB3O15347 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 RN7SL850P-201ENST00000579959 291 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 MIR3180-1-201ENST00000580374 94 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 MIR3180-3-201ENST00000584616 94 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
HMGB3O15347 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 AC116407.4-201ENST00000623319 1061 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 AC097359.2-201ENST00000604992 2389 ntBASIC12.45□□□□□ -0.42
HMGB3O15347 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC12.45□□□□□ -0.42
HMGB3O15347 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HMGB3O15347 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
HMGB3O15347 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.44□□□□□ -0.42
HMGB3O15347 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
HMGB3O15347 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.44□□□□□ -0.42
HMGB3O15347 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
HMGB3O15347 IGHV3OR16-7-201ENST00000604106 360 ntBASIC12.44□□□□□ -0.42
HMGB3O15347 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 CACNA1C-213ENST00000399629 6562 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HMGB3O15347 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms