RNA–Protein interactions for RNA: ENST00000370828.3

GPC4-201, Transcript of glypican 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC4, Length 4,960 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4-201ENST00000370828 MYT1Q01538 1121 aa21.4■■□□□ 1.02
GPC4-201ENST00000370828 PELP1Q8IZL8 1130 aaKnown RBP21.23■□□□□ 0.99
GPC4-201ENST00000370828 SUPT5HO00267 1087 aaKnown RBP20.75■□□□□ 0.91
GPC4-201ENST00000370828 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
GPC4-201ENST00000370828 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.84
GPC4-201ENST00000370828 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
GPC4-201ENST00000370828 NISCHQ9Y2I1 1504 aa20.1■□□□□ 0.81
GPC4-201ENST00000370828 EHMT2Q96KQ7 1210 aa20.06■□□□□ 0.8
GPC4-201ENST00000370828 CENPBP07199 599 aaPredicted RBP19.84■□□□□ 0.77
GPC4-201ENST00000370828 TTBK1Q5TCY1 1321 aaPredicted RBP19.82■□□□□ 0.76
GPC4-201ENST00000370828 HRCP23327 699 aa19.76■□□□□ 0.75
GPC4-201ENST00000370828 ZEB1P37275 1124 aaPredicted RBP19.69■□□□□ 0.74
GPC4-201ENST00000370828 ERICH6Q7L0X2 663 aa19.56■□□□□ 0.72
GPC4-201ENST00000370828 FAM9AQ8IZU1 332 aaPredicted RBP19.55■□□□□ 0.72
GPC4-201ENST00000370828 PPARGC1BQ86YN6 1023 aaKnown RBP19.52■□□□□ 0.72
GPC4-201ENST00000370828 YTHDC1Q96MU7 727 aaKnown RBP19.47■□□□□ 0.71
GPC4-201ENST00000370828 CCER1Q8TC90 406 aaPredicted RBP19.46■□□□□ 0.71
GPC4-201ENST00000370828 TRIM26Q12899 539 aaPredicted RBP19.22■□□□□ 0.67
GPC4-201ENST00000370828 APLP2Q06481 763 aa19.2■□□□□ 0.66
GPC4-201ENST00000370828 TRIM41Q8WV44 630 aa19.02■□□□□ 0.64
GPC4-201ENST00000370828 NEFLP07196 543 aa19.01■□□□□ 0.63
GPC4-201ENST00000370828 LOC105371045A0A1W2PR82 267 aa18.97■□□□□ 0.63
GPC4-201ENST00000370828 GTF3C3Q9Y5Q9 886 aa18.9■□□□□ 0.62
GPC4-201ENST00000370828 CHIC1Q5VXU3 224 aa18.87■□□□□ 0.61
GPC4-201ENST00000370828 RANGAP1P46060 587 aaPredicted RBP18.8■□□□□ 0.6
GPC4-201ENST00000370828 DIEXFQ68CQ4 756 aaKnown RBP18.8■□□□□ 0.6
GPC4-201ENST00000370828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.7■□□□□ 0.58
GPC4-201ENST00000370828 ACIN1Q9UKV3 1341 aaKnown RBP18.64■□□□□ 0.58
GPC4-201ENST00000370828 UBTFP17480 764 aaKnown RBP18.64■□□□□ 0.57
GPC4-201ENST00000370828 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
GPC4-201ENST00000370828 BCANQ96GW7 911 aa18.45■□□□□ 0.54
GPC4-201ENST00000370828 HNRNPUL2Q1KMD3 747 aaKnown RBP18.45■□□□□ 0.54
GPC4-201ENST00000370828 RTL5Q5HYW3 569 aaPredicted RBP18.34■□□□□ 0.53
GPC4-201ENST00000370828 ATP1B4Q9UN42 357 aaPredicted RBP18.34■□□□□ 0.53
GPC4-201ENST00000370828 NEUROD1Q13562 356 aa18.33■□□□□ 0.52
GPC4-201ENST00000370828 DAXXQ9UER7 740 aaPredicted RBP18.28■□□□□ 0.52
GPC4-201ENST00000370828 GLIPR1L2Q4G1C9 344 aa18.28■□□□□ 0.52
GPC4-201ENST00000370828 ITGAEP38570 1179 aa18.26■□□□□ 0.51
GPC4-201ENST00000370828 ZNF316A6NFI3 1004 aaPredicted RBP18.21■□□□□ 0.51
GPC4-201ENST00000370828 CNGB1Q14028 1251 aaPredicted RBP18.12■□□□□ 0.49
GPC4-201ENST00000370828 SLC24A1O60721 1099 aa18.08■□□□□ 0.48
GPC4-201ENST00000370828 CDK11AQ9UQ88 783 aaPredicted RBP18.07■□□□□ 0.48
GPC4-201ENST00000370828 POLR3GLQ9BT43 218 aa18.05■□□□□ 0.48
GPC4-201ENST00000370828 EIF5BO60841 1220 aaKnown RBP17.99■□□□□ 0.47
GPC4-201ENST00000370828 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
GPC4-201ENST00000370828 MYT1LQ9UL68 1186 aa17.94■□□□□ 0.46
GPC4-201ENST00000370828 FKBP8Q14318 412 aa17.91■□□□□ 0.46
GPC4-201ENST00000370828 DCAF1Q9Y4B6 1507 aa17.87■□□□□ 0.45
GPC4-201ENST00000370828 ANP32CO43423 234 aa17.83■□□□□ 0.45
GPC4-201ENST00000370828 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
GPC4-201ENST00000370828 ANP32EQ9BTT0 268 aa17.81■□□□□ 0.44
GPC4-201ENST00000370828 MIER1Q8N108 512 aa17.78■□□□□ 0.44
GPC4-201ENST00000370828 ANP32AP39687 249 aaKnown RBP17.73■□□□□ 0.43
GPC4-201ENST00000370828 NBR1Q14596 966 aa17.72■□□□□ 0.43
GPC4-201ENST00000370828 NPM2Q86SE8 214 aaKnown RBP17.68■□□□□ 0.42
GPC4-201ENST00000370828 MYO15BQ96JP2 1530 aa17.65■□□□□ 0.42
GPC4-201ENST00000370828 FAM50AQ14320 339 aaKnown RBP17.63■□□□□ 0.41
GPC4-201ENST00000370828 TRIM52Q96A61 297 aa17.56■□□□□ 0.4
GPC4-201ENST00000370828 DDX10Q13206 875 aaKnown RBP17.52■□□□□ 0.4
GPC4-201ENST00000370828 PRKCSHP14314 528 aaPredicted RBP17.52■□□□□ 0.39
GPC4-201ENST00000370828 HNRNPUQ00839 825 aaKnown RBP eCLIP17.51■□□□□ 0.39
GPC4-201ENST00000370828 IRX6P78412 446 aaPredicted RBP17.49■□□□□ 0.39
GPC4-201ENST00000370828 ZBTB47Q9UFB7 747 aaPredicted RBP17.47■□□□□ 0.39
GPC4-201ENST00000370828 SUPT16HQ9Y5B9 1047 aaKnown RBP17.42■□□□□ 0.38
GPC4-201ENST00000370828 RTN4Q9NQC3 1192 aaKnown RBP17.37■□□□□ 0.37
GPC4-201ENST00000370828 ZNF326Q5BKZ1 582 aaKnown RBP17.36■□□□□ 0.37
GPC4-201ENST00000370828 CSRNP3Q8WYN3 585 aa17.36■□□□□ 0.37
GPC4-201ENST00000370828 FAM9BQ8IZU0 186 aa17.34■□□□□ 0.37
GPC4-201ENST00000370828 CCDC136Q96JN2 1154 aa17.33■□□□□ 0.36
GPC4-201ENST00000370828 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
GPC4-201ENST00000370828 ARXQ96QS3 562 aa17.29■□□□□ 0.36
GPC4-201ENST00000370828 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.35
GPC4-201ENST00000370828 HIRIP3Q9BW71 556 aaPredicted RBP17.25■□□□□ 0.35
GPC4-201ENST00000370828 DEKP35659 375 aaKnown RBP17.21■□□□□ 0.35
GPC4-201ENST00000370828 RBM19Q9Y4C8 960 aaKnown RBP17.2■□□□□ 0.34
GPC4-201ENST00000370828 TSHZ2Q9NRE2 1034 aa17.19■□□□□ 0.34
GPC4-201ENST00000370828 CANXP27824 592 aaKnown RBP17.18■□□□□ 0.34
GPC4-201ENST00000370828 SALL2Q9Y467 1007 aaPredicted RBP17.17■□□□□ 0.34
GPC4-201ENST00000370828 TNNT2P45379 298 aaPredicted RBP17.14■□□□□ 0.33
GPC4-201ENST00000370828 TONSLQ96HA7 1378 aa17.14■□□□□ 0.33
GPC4-201ENST00000370828 NEFMP07197 916 aa17.12■□□□□ 0.33
GPC4-201ENST00000370828 MRS2Q9HD23 443 aa17.11■□□□□ 0.33
GPC4-201ENST00000370828 NOP58Q9Y2X3 529 aaKnown RBP17.11■□□□□ 0.33
GPC4-201ENST00000370828 ANP32BQ92688 251 aaKnown RBP17.11■□□□□ 0.33
GPC4-201ENST00000370828 LAS1LQ9Y4W2 734 aaKnown RBP17.09■□□□□ 0.33
GPC4-201ENST00000370828 PODXL2Q9NZ53 605 aa17.07■□□□□ 0.32
GPC4-201ENST00000370828 NCLP19338 710 aaKnown RBP17.05■□□□□ 0.32
GPC4-201ENST00000370828 P3H3Q8IVL6 736 aa17.04■□□□□ 0.32
GPC4-201ENST00000370828 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.02■□□□□ 0.32
GPC4-201ENST00000370828 CDK11BP21127 795 aaKnown RBP17.02■□□□□ 0.31
GPC4-201ENST00000370828 UPF2Q9HAU5 1272 aaKnown RBP17.01■□□□□ 0.31
GPC4-201ENST00000370828 HSP90AA1P07900 732 aaKnown RBP17.01■□□□□ 0.31
GPC4-201ENST00000370828 SENP3-EIF4A1A0A087X0R7 540 aa17■□□□□ 0.31
GPC4-201ENST00000370828 TMC1Q8TDI8 760 aa16.99■□□□□ 0.31
GPC4-201ENST00000370828 PPP4R2Q9NY27 417 aa16.99■□□□□ 0.31
GPC4-201ENST00000370828 B4GALNT3Q6L9W6 998 aa16.98■□□□□ 0.31
GPC4-201ENST00000370828 ABCC9O60706 1549 aa16.98■□□□□ 0.31
GPC4-201ENST00000370828 ERICH6BQ5W0A0 696 aa16.97■□□□□ 0.31
GPC4-201ENST00000370828 PPM1GO15355 546 aaPredicted RBP16.97■□□□□ 0.31
GPC4-201ENST00000370828 DDRGK1Q96HY6 314 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms