Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSU72Q9NP77 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SSU72Q9NP77 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSU72Q9NP77 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SSU72Q9NP77 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SSU72Q9NP77 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSU72Q9NP77 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SSU72Q9NP77 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 SLC25A6P4-201ENST00000586535 553 ntBASIC15.27■□□□□ 0.04
SSU72Q9NP77 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SSU72Q9NP77 AC023090.2-201ENST00000625182 2110 ntBASIC15.27■□□□□ 0.04
SSU72Q9NP77 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.27■□□□□ 0.04
SSU72Q9NP77 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 Z97205.2-201ENST00000564697 1639 ntBASIC15.27■□□□□ 0.03
SSU72Q9NP77 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 AL354702.1-201ENST00000442006 1960 ntBASIC15.27■□□□□ 0.03
SSU72Q9NP77 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
SSU72Q9NP77 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SSU72Q9NP77 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 AC022447.6-201ENST00000515522 438 ntBASIC15.26■□□□□ 0.03
SSU72Q9NP77 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
SSU72Q9NP77 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SSU72Q9NP77 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms