RNA–Protein interactions for RNA: ENST00000510377.5

USP38-202, Transcript of ubiquitin specific peptidase 38, humanhuman

TSL 1 (best) BASIC

Gene USP38, Length 4,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-202ENST00000510377 NISCHQ9Y2I1 1504 aa27.37■■□□□ 1.97
USP38-202ENST00000510377 DCAF8L2P0C7V8 631 aa25.61■■□□□ 1.69
USP38-202ENST00000510377 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
USP38-202ENST00000510377 SHROOM4Q9ULL8 1493 aa25.47■■□□□ 1.67
USP38-202ENST00000510377 PCGF6Q9BYE7 350 aa24.48■■□□□ 1.51
USP38-202ENST00000510377 EHMT2Q96KQ7 1210 aa24.15■■□□□ 1.46
USP38-202ENST00000510377 HRCP23327 699 aa24.03■■□□□ 1.44
USP38-202ENST00000510377 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
USP38-202ENST00000510377 PPARGC1BQ86YN6 1023 aaKnown RBP23.9■■□□□ 1.42
USP38-202ENST00000510377 FAM9AQ8IZU1 332 aaPredicted RBP23.82■■□□□ 1.4
USP38-202ENST00000510377 LOC105371045A0A1W2PR82 267 aa23.77■■□□□ 1.4
USP38-202ENST00000510377 TRIM41Q8WV44 630 aa23.41■■□□□ 1.34
USP38-202ENST00000510377 TTBK1Q5TCY1 1321 aaPredicted RBP23.4■■□□□ 1.34
USP38-202ENST00000510377 TRIM26Q12899 539 aaPredicted RBP23.39■■□□□ 1.34
USP38-202ENST00000510377 MYO15BQ96JP2 1530 aa23.27■■□□□ 1.31
USP38-202ENST00000510377 ZEB1P37275 1124 aaPredicted RBP23.22■■□□□ 1.31
USP38-202ENST00000510377 CCER1Q8TC90 406 aaPredicted RBP23.09■■□□□ 1.29
USP38-202ENST00000510377 ABCC9O60706 1549 aa23.07■■□□□ 1.28
USP38-202ENST00000510377 ZCCHC6Q5VYS8 1495 aaKnown RBP22.99■■□□□ 1.27
USP38-202ENST00000510377 PELP1Q8IZL8 1130 aaKnown RBP22.87■■□□□ 1.25
USP38-202ENST00000510377 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.81■■□□□ 1.24
USP38-202ENST00000510377 CENPBP07199 599 aaPredicted RBP22.76■■□□□ 1.23
USP38-202ENST00000510377 YTHDC1Q96MU7 727 aaKnown RBP22.74■■□□□ 1.23
USP38-202ENST00000510377 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
USP38-202ENST00000510377 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
USP38-202ENST00000510377 UBTFP17480 764 aaKnown RBP22.63■■□□□ 1.21
USP38-202ENST00000510377 PABPN1Q86U42 306 aaKnown RBP eCLIP22.56■■□□□ 1.2
USP38-202ENST00000510377 APLP2Q06481 763 aa22.54■■□□□ 1.2
USP38-202ENST00000510377 DIEXFQ68CQ4 756 aaKnown RBP22.47■■□□□ 1.19
USP38-202ENST00000510377 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
USP38-202ENST00000510377 GTF3C3Q9Y5Q9 886 aa22.38■■□□□ 1.17
USP38-202ENST00000510377 HNRNPUL2Q1KMD3 747 aaKnown RBP22.36■■□□□ 1.17
USP38-202ENST00000510377 CCDC180Q9P1Z9 1646 aa22.34■■□□□ 1.17
USP38-202ENST00000510377 ACIN1Q9UKV3 1341 aaKnown RBP22.28■■□□□ 1.16
USP38-202ENST00000510377 NEUROD1Q13562 356 aa22.22■■□□□ 1.15
USP38-202ENST00000510377 SCRIBQ14160 1630 aa22.18■■□□□ 1.14
USP38-202ENST00000510377 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
USP38-202ENST00000510377 ZNF316A6NFI3 1004 aaPredicted RBP21.99■■□□□ 1.11
USP38-202ENST00000510377 ITGAEP38570 1179 aa21.97■■□□□ 1.11
USP38-202ENST00000510377 MYT1Q01538 1121 aa21.92■■□□□ 1.1
USP38-202ENST00000510377 ATP1B4Q9UN42 357 aaPredicted RBP21.86■■□□□ 1.09
USP38-202ENST00000510377 CSRNP3Q8WYN3 585 aa21.84■■□□□ 1.09
USP38-202ENST00000510377 RB1CC1Q8TDY2 1594 aa21.77■■□□□ 1.08
USP38-202ENST00000510377 MIER1Q8N108 512 aa21.73■■□□□ 1.07
USP38-202ENST00000510377 CECR2Q9BXF3 1484 aa21.7■■□□□ 1.06
USP38-202ENST00000510377 BCANQ96GW7 911 aa21.62■■□□□ 1.05
USP38-202ENST00000510377 NEFLP07196 543 aa21.59■■□□□ 1.05
USP38-202ENST00000510377 CEP162Q5TB80 1403 aa21.59■■□□□ 1.05
USP38-202ENST00000510377 MROH2BQ7Z745 1585 aa21.46■■□□□ 1.03
USP38-202ENST00000510377 ERICH6Q7L0X2 663 aa21.42■■□□□ 1.02
USP38-202ENST00000510377 SOGA1O94964 1423 aa21.41■■□□□ 1.02
USP38-202ENST00000510377 FAM50AQ14320 339 aaKnown RBP21.37■■□□□ 1.01
USP38-202ENST00000510377 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
USP38-202ENST00000510377 ABCC8Q09428 1581 aa21.34■■□□□ 1.01
USP38-202ENST00000510377 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
USP38-202ENST00000510377 CLIP1P30622 1438 aa21.31■■□□□ 1
USP38-202ENST00000510377 NACADO15069 1562 aa21.27■□□□□ 0.99
USP38-202ENST00000510377 WIZO95785 1651 aa21.26■□□□□ 0.99
USP38-202ENST00000510377 CNGB1Q14028 1251 aaPredicted RBP21.25■□□□□ 0.99
USP38-202ENST00000510377 GOLGA3Q08378 1498 aa21.22■□□□□ 0.99
USP38-202ENST00000510377 P3H3Q8IVL6 736 aa21.2■□□□□ 0.98
USP38-202ENST00000510377 DDX10Q13206 875 aaKnown RBP21.19■□□□□ 0.98
USP38-202ENST00000510377 FKBP8Q14318 412 aa21.19■□□□□ 0.98
USP38-202ENST00000510377 HIRIP3Q9BW71 556 aaPredicted RBP21.16■□□□□ 0.98
USP38-202ENST00000510377 WRNQ14191 1432 aaPredicted RBP eCLIP21.14■□□□□ 0.971e-7■■■■■ 66.8
USP38-202ENST00000510377 EEA1Q15075 1411 aa21.13■□□□□ 0.97
USP38-202ENST00000510377 RUSC2Q8N2Y8 1516 aa21.11■□□□□ 0.97
USP38-202ENST00000510377 BAZ1AQ9NRL2 1556 aaPredicted RBP21.1■□□□□ 0.97
USP38-202ENST00000510377 ANP32CO43423 234 aa21.08■□□□□ 0.97
USP38-202ENST00000510377 TRIM52Q96A61 297 aa21.08■□□□□ 0.97
USP38-202ENST00000510377 POLR3GLQ9BT43 218 aa21.08■□□□□ 0.96
USP38-202ENST00000510377 SUPT16HQ9Y5B9 1047 aaKnown RBP21.06■□□□□ 0.96
USP38-202ENST00000510377 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
USP38-202ENST00000510377 FBLN2P98095 1184 aa21■□□□□ 0.95
USP38-202ENST00000510377 CLSPNQ9HAW4 1339 aa20.97■□□□□ 0.95
USP38-202ENST00000510377 KANK4Q5T7N3 995 aaPredicted RBP20.94■□□□□ 0.94
USP38-202ENST00000510377 VPS8Q8N3P4 1428 aa20.9■□□□□ 0.94
USP38-202ENST00000510377 SIN3AQ96ST3 1273 aa20.89■□□□□ 0.93
USP38-202ENST00000510377 IRX6P78412 446 aaPredicted RBP20.89■□□□□ 0.93
USP38-202ENST00000510377 KCNH8Q96L42 1107 aa20.85■□□□□ 0.93
USP38-202ENST00000510377 HNRNPUQ00839 825 aaKnown RBP eCLIP20.84■□□□□ 0.93
USP38-202ENST00000510377 CDK11AQ9UQ88 783 aaPredicted RBP20.83■□□□□ 0.93
USP38-202ENST00000510377 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
USP38-202ENST00000510377 ARID3CA6NKF2 412 aa20.8■□□□□ 0.92
USP38-202ENST00000510377 ANP32EQ9BTT0 268 aa20.79■□□□□ 0.92
USP38-202ENST00000510377 TSHZ2Q9NRE2 1034 aa20.76■□□□□ 0.91
USP38-202ENST00000510377 TONSLQ96HA7 1378 aa20.76■□□□□ 0.91
USP38-202ENST00000510377 RAPGEF2Q9Y4G8 1499 aa20.76■□□□□ 0.91
USP38-202ENST00000510377 DHX57Q6P158 1386 aaKnown RBP20.71■□□□□ 0.91
USP38-202ENST00000510377 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
USP38-202ENST00000510377 BAZ1BQ9UIG0 1483 aaKnown RBP20.7■□□□□ 0.9
USP38-202ENST00000510377 ZNF326Q5BKZ1 582 aaKnown RBP20.7■□□□□ 0.9
USP38-202ENST00000510377 FAM9BQ8IZU0 186 aa20.68■□□□□ 0.9
USP38-202ENST00000510377 CHIC2Q9UKJ5 165 aa20.67■□□□□ 0.9
USP38-202ENST00000510377 SMARCA2P51531 1590 aa20.66■□□□□ 0.9
USP38-202ENST00000510377 SMARCA4P51532 1647 aa20.63■□□□□ 0.89
USP38-202ENST00000510377 SENP3-EIF4A1A0A087X0R7 540 aa20.6■□□□□ 0.89
USP38-202ENST00000510377 MYT1LQ9UL68 1186 aa20.59■□□□□ 0.89
USP38-202ENST00000510377 KIF27Q86VH2 1401 aa20.59■□□□□ 0.89
USP38-202ENST00000510377 RAB3GAP2Q9H2M9 1393 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms